[adegenet-forum] FST genlight

[Thierry Gosselin]

Hi Guillaume and Thibault,

How many markers in the genlight object ?

Cheers,
Thierry
 
> On Apr 4, 2017, at 09:19, Thibaut Jombart <thibautjombart at gmail.com> wrote:
> 
> I think Jérome Goudet was thinking of implementing this at some point,
> but I don't know where this ended. This is not implemented as it is in
> adegenet. PR welcome ;)
> 
> Cheers
> Thibaut
> 
> --
> Dr Thibaut Jombart
> Lecturer, Department of Infectious Disease Epidemiology, Imperial College London
> Head of RECON: repidemicsconsortium.org
> sites.google.com/site/thibautjombart/
> github.com/thibautjombart
> Twitter: @TeebzR
> +44(0)20 7594 3658
> 
> 
> On 4 April 2017 at 12:58, Guillaume Robert <guillaume.robert at inra.fr> wrote:
>> Hi,
>> 
>> 
>> I use adegenet to perform FST analysis for a big set of SNPs markers.
>> 
>> 
>> I've already loaded my data in a genlight object, but I haven't found how to
>> do a FST computation for each SNP.
>> 
>> (the method described in the "basic tutorial" is for genind object)
>> 
>> 
>> Would anyone know if it's possible, and how?
>> 
>> 
>> Thanks,
>> 
>> 
>> Guillaume
>> 
>> 
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