[adegenet-forum] Converting between adegenet and genetics

Jombart, Thibaut t.jombart at imperial.ac.uk
Fri Oct 9 15:55:30 CEST 2015

Dear Robert,

as of version 2.0.0, adegenet is no longer interfaced with the package genetics, but is meant to work with a number of others: hierfstat, pegas, poppr, ape, etc. I believe most functionalities implemented in genetics are implemented elsewhere, but please let me know if something is missing.


From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Robert Fairweather [osue37 at bangor.ac.uk]
Sent: 09 October 2015 14:46
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] Converting between adegenet and genetics

Dear Thibaut,
I am trying to export a genind object from adegenet to genetics package format so that I can use functions in that package not available in adegenet. The adegenet homepage suggests that this is possible, but I cannot find anything in the instruction pdf detailing the appropriate function(s). An earlier post suggests the function genind2genotype, but this does not exist in the manual and cannot be found in the version of adegenet that I am using (2.0.0).
How can I export my genind object into genetics?
Best wishes,

Rhif Elusen Gofrestredig 1141565 - Registered Charity No. 1141565

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