Hi Thibaut! I have a problem similar to Simon. I have tried to use the function 'summary', but I get 0 both for the observed heterozigosity both for the expected one... I have tried to use the function 'basic.stats' in hierfstat, but it doesn't give a result for Ho, in my case with my data. any idea? Thanks! Maria -- Maria Guerrina PhD Universit? di Genova DISTAV Corso Dogali 1M I - 16136 GENOVA (Italy) maria.guerrina at edu.unige.it On 23/nov/2015, at 13.11, Jombart, Thibaut wrote:-- Simon Nadeau, M. Sc. Biologiste / Biologist Ressources naturelles Canada, Service canadien des for?ts, Centre de foresterie des Laurentides / Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre 1055 rue du P.E.P.S., C.P. 10380 succ. Sainte-Foy, Qu?bec (Qu?bec), Canada G1V 4C7 Simon.Nadeau at a lumni.UBC.ca , Simon.Nadeau at canada.ca Tel: (604) 349-5196 _______________________________________________ adegenet-forum mailing list adegenet-forum at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum -------------- next part -------------- An HTML attachment was scrubbed... URL:Hello, have you tried 'summary'? Note, the current devel version is better (previous summary was returning invisibly a list). Cheers Thibaut From: adegenet-forum-bounces at lists.r-forge.r-project.org [ adegenet-forum-bounces at lists.r-forge.r-project.org ] on behalf of Simon Nadeau [ simon.nadeau.ubc at gmail.com ] Sent: 19 November 2015 23:00 To: adegenet-forum at lists.r-forge.r-project.org Subject: [adegenet-forum] How to get observed heterozygosity per population Hi, I have recently been using the various features of adegenet unsing genind objects and I works great so far. However, I can't seem to be able to find easy summary stats: Observed heterozygosity per population: this would be very handy but I only found the function Hs (expected heterozygosity). Global allele frequencies per loci: there is a nice histogram of minor allele frequencies on page 30 of the adegenet genomic tutorial, but I can't find how to generate the same plot using genind objects. Thank you very much for your help, Simon -- Simon Nadeau, M. Sc. Biologiste / Biologist Ressources naturelles Canada, Service canadien des for?ts, Centre de foresterie des Laurentides / Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre 1055 rue du P.E.P.S., C.P. 10380 succ. Sainte-Foy, Qu?bec (Qu?bec), Canada G1V 4C7 Simon.Nadeau at a lumni.UBC.ca , Simon.Nadeau at canada.ca Tel: (604) 349-5196 _______________________________________________ adegenet-forum mailing list adegenet-forum at lists.r-forge.r-project.org https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum-- Simon Nadeau, M. Sc. Biologiste / Biologist Ressources naturelles Canada, Service canadien des for?ts, Centre de foresterie des Laurentides / Natural Resources Canada, Canadian Forest Service, Laurentian Forestry Centre 1055 rue du P.E.P.S., C.P. 10380 succ. Sainte-Foy, Qu?bec (Qu?bec), Canada G1V 4C7 Simon.Nadeau at a lumni.UBC.ca , Simon.Nadeau at canada.ca Tel: (604) 349-5196