[adegenet-forum] How can I filter out loci out of HWE from a genind object?

Ana Verissimo verissimoac at gmail.com
Mon Jul 20 16:58:51 CEST 2015


Hi all,

I have a data set comprised on 1000s of SNP loci genotyped for 10s of
individuals. I have tested loci for conformance to HWE and want to filter
out those loci out of HWE.

Is there a function already available to perform this filtering in genind
objects?
If not, I am guessing I may need to figure out a way to subset my data
using a list of loci that I want to keep?

Any tips or suggestions are welcome!
Ana
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