[adegenet-forum] Problem installation on Ubuntu

Jombart, Thibaut t.jombart at imperial.ac.uk
Mon Jul 14 11:51:27 CEST 2014

Argh, just seeing this one. Well done on nailing it. 
Yep, probably best reporting this to the igraph maintainer. You may not be the only one going through this issue.

From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Samuel Knapp [samuel.k at gmx.de]
Sent: 12 July 2014 22:06
To: adegenet-forum at lists.r-forge.r-project.org
Subject: Re: [adegenet-forum] Problem installation on Ubuntu

I could now narrow down the problem:

After commenting out the importFrom(igraph,.. [see below] in the
NAMESPACE file, I could install adegenet without any problem.

#importFrom(igraph, "graph.data.frame", "V", "V<-", "E", "E<-",
#         "layout.fruchterman.reingold",
#         "as.igraph", "plot.igraph", "print.igraph", "graph.adjacency",

So, this error must be due to the igraph package. When loading igraph
with library("igraph") the long error message was also produced. After
install.packages("igraph"), I can also load it normally and install
adegenet without commenting out the above.

Probably this should rather be reported to igraph...
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