[adegenet-forum] DAPC stats
t.jombart at imperial.ac.uk
Tue Apr 23 08:27:46 CEST 2013
if you have pre-defined populations and want to measure differentiation, I would recommend using usual measures - Fst, pairwise Fst, or any of the 5 population distances implemented in dist.genpop. DAPC will complement these results, by describing how the diversity of these populations is organized.
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Stefan Prost [stefan.prost at anatomy.otago.ac.nz]
Sent: 23 April 2013 03:48
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] DAPC stats
I've run a DAPC analysis on geographically pre-defined popualtions and I
would like to provide some stats about population differentiation and
shared ancestry. Which ones would you suggest to use?
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