[adegenet-forum] DAPC stats

[Jombart, Thibaut]

Dear Stefan, 

if you have pre-defined populations and want to measure differentiation, I would recommend using usual measures - Fst, pairwise Fst, or any of the 5 population distances implemented in dist.genpop. DAPC will complement these results, by describing how the diversity of these populations is organized.

Best
Thibaut


________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] on behalf of Stefan Prost [stefan.prost at anatomy.otago.ac.nz]
Sent: 23 April 2013 03:48
To: adegenet-forum at lists.r-forge.r-project.org
Subject: [adegenet-forum] DAPC stats

Hello,

 I've run a DAPC analysis on geographically pre-defined popualtions and I
would like to provide some stats about population differentiation and
shared ancestry. Which ones would you suggest to use?

Best,
Stefan

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