[adegenet-forum] Loading problem adegenet_1.2-8, Mac (R64)

[Martin van der Meer]

Hi

I can seem to load up adegenet v1.2-8 on R64. It comes up with the following
errors:

[History restored from /Users/jc216923/.Rapp.history]

Warning: dependencies ‘hierfstat’, ‘graph’ are not available
trying URL '
http://cran.ms.unimelb.edu.au/bin/macosx/leopard/contrib/2.13/adegenet_1.2-8.tgz
'
Content type 'application/x-tar' length 3046842 bytes (2.9 Mb)
opened URL
==================================================
downloaded 2.9 Mb


The downloaded packages are in

/var/folders/RU/RUdQ1Y1lEcamHshypf82kLM8L+s/-Tmp-//RtmpYi0SS0/downloaded_packages
Loading required package: MASS
   ==========================
    adegenet 1.2-8 is loaded
   ==========================

 - to start, type '?adegenet'
 - to browse adegenet website, type 'adegenetWeb()'
 - to post questions/comments: adegenet-forum at lists.r-forge.r-project.org


Error in as.environment(pos) :
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
Error in as.environment(pos) :
  no item called "newtable" on the search list
In addition: Warning message:
In objects(newtable, all.names = TRUE) :
  ‘newtable’ converted to character string
starting httpd help server ... done


I then tried:

> install.packages("adegenet", dep=TRUE)
Installing package(s) into ‘/Users/jc216923/Library/R/2.13/library’
(as ‘lib’ is unspecified)
Warning: dependencies ‘hierfstat’, ‘graph’ are not available
trying URL '
http://cran.ms.unimelb.edu.au/bin/macosx/leopard/contrib/2.13/adegenet_1.2-8.tgz
'
Content type 'application/x-tar' length 3046842 bytes (2.9 Mb)
opened URL
==================================================
downloaded 2.9 Mb


The downloaded packages are in

/var/folders/RU/RUdQ1Y1lEcamHshypf82kLM8L+s/-Tmp-//RtmpYi0SS0/downloaded_packages


But its still not being able to load.

Please can someone suggest a solution for a Mac OS system.

cheers
Martin

-- 
Martin van der Meer
PhD candidate
Molecular Ecology and Evolutionary Laboratory
Australian Tropical Sciences and Innovation Precinct
School of Marine and Tropical Biology
James Cook University
Townsville
Australia
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