[adegenet-forum] problems with .GTX and .GEN file formats

Jombart, Thibaut t.jombart at imperial.ac.uk
Fri May 1 21:48:39 CEST 2009


Dear Niklas, 

can you please provide the command you typed ? Even though Vista plays oddly with file extensions, it should not change the ability to read the file. It does not, on my linux system. 

Isn't 'example(read.genetix)' even working ?

Best,

Thibaut.
--
######################################
Dr Thibaut JOMBART
MRC Centre for Outbreak Analysis and Modelling
Department of Infectious Disease Epidemiology
Imperial College - Faculty of Medicine
St Mary’s Campus
Norfolk Place
London W2 1PG
United Kingdom
Tel. : 0044 (0)20 7594 3658
t.jombart at imperial.ac.uk
http://www1.imperial.ac.uk/medicine/people/t.jombart/
http://adegenet.r-forge.r-project.org/
________________________________________
From: adegenet-forum-bounces at lists.r-forge.r-project.org [adegenet-forum-bounces at lists.r-forge.r-project.org] On Behalf Of Niklas Tysklind [osp231 at bangor.ac.uk]
Sent: 01 May 2009 18:34
To: adegenet-forum at r-forge.wu-wien.ac.at
Subject: [adegenet-forum] problems with .GTX and .GEN file formats

Dear Adegenet users,

Just started using Adegenet (or trying), but I dont seem to be able to
open any genepop or genetix files (not even the example ones). I get
this error message:

Error in if (toupper(.readExt(file)) != "GTX") stop("File extension .gtx
expected") :
  argument is of length zero

r in if (toupper(.readExt(file)) != "GEN") stop("File extension .gen
expected") :
  argument is of length zero

I have checked that I have the latest version or R and Adegenet
(according to the manual). I've tried saving the files with .gtx and
.gen, but the computer (windows Vista) seems to automatically change
them to .GTX and .GEN.

Anyone else has experience this problem? If so, how do I solve it?

Thanks in advance for any hints on how to proceed... feeling quite stuck
right now.

Cheers,

Niklas


--
Gall y neges e-bost hon, ac unrhyw atodiadau a anfonwyd gyda hi,
gynnwys deunydd cyfrinachol ac wedi eu bwriadu i'w defnyddio'n unig
gan y sawl y cawsant eu cyfeirio ato (atynt). Os ydych wedi derbyn y
neges e-bost hon trwy gamgymeriad, rhowch wybod i'r anfonwr ar
unwaith a dilëwch y neges. Os na fwriadwyd anfon y neges atoch chi,
rhaid i chi beidio â defnyddio, cadw neu ddatgelu unrhyw wybodaeth a
gynhwysir ynddi. Mae unrhyw farn neu safbwynt yn eiddo i'r sawl a'i
hanfonodd yn unig  ac nid yw o anghenraid yn cynrychioli barn
Prifysgol Bangor. Nid yw Prifysgol Bangor yn gwarantu
bod y neges e-bost hon neu unrhyw atodiadau yn rhydd rhag firysau neu
100% yn ddiogel. Oni bai fod hyn wedi ei ddatgan yn uniongyrchol yn
nhestun yr e-bost, nid bwriad y neges e-bost hon yw ffurfio contract
rhwymol - mae rhestr o lofnodwyr awdurdodedig ar gael o Swyddfa
Cyllid Prifysgol Bangor.  www.bangor.ac.uk

This email and any attachments may contain confidential material and
is solely for the use of the intended recipient(s).  If you have
received this email in error, please notify the sender immediately
and delete this email.  If you are not the intended recipient(s), you
must not use, retain or disclose any information contained in this
email.  Any views or opinions are solely those of the sender and do
not necessarily represent those of the Bangor University.
Bangor University does not guarantee that this email or
any attachments are free from viruses or 100% secure.  Unless
expressly stated in the body of the text of the email, this email is
not intended to form a binding contract - a list of authorised
signatories is available from the Bangor University Finance
Office.  www.bangor.ac.uk

_______________________________________________
adegenet-forum mailing list
adegenet-forum at lists.r-forge.r-project.org
https://lists.r-forge.r-project.org/cgi-bin/mailman/listinfo/adegenet-forum


More information about the adegenet-forum mailing list