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<pre>Dear Thibaut and other friends,
I ran the Structure software and after I used your package adegenet to campare the values of FST. In both cases, I chose ONEFST=1 (STRUCTURE) and FSTonly=TRUE (ADEGENET).
Probably, the used methodology is a bit different but the result was similar.
My doubt is that in STRUCTURE I found in a triangle plot 3 clusters in differents extremes of triangle. And the found value of FST was close to 0.15, meaning that the populations are very close related.
I used K = 3 in Structure because I know that I have 3 populations very well caracterized (3 different breeds totally distint).
<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: 'Times New Roman'; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; font-size: medium;"><pre>---------------
3
1 2
---------------</pre></span>In my opinion, the values of FST are not matching with the found plot.
Can anyone help me?
Cheers,
Ricardo
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