From noreply at r-forge.r-project.org  Sat Oct 25 18:28:47 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Sat, 25 Oct 2014 18:28:47 +0200 (CEST)
Subject: [adegenet-commits] r1182 - in www: . files files/Leuven2014
Message-ID: <20141025162847.3BA2E1876C8@r-forge.r-project.org>

Author: jombart
Date: 2014-10-25 18:28:46 +0200 (Sat, 25 Oct 2014)
New Revision: 1182

Added:
   www/files/Leuven2014/
   www/files/Leuven2014/Refresh-R.pptx
   www/files/Leuven2014/lecture-MVA.1.1.pdf
   www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
   www/files/Leuven2014/lecture-MVAspatial.1.1.pdf
   www/files/Leuven2014/lecture-phylo.1.3.pdf
   www/files/Leuven2014/practical-MVAgroups.1.0.pdf
   www/files/Leuven2014/practical-MVAintro.1.0.pdf
   www/files/Leuven2014/practical-MVAspatial.1.0.pdf
   www/files/Leuven2014/practical-introphylo.1.0.pdf
Modified:
   www/documentation.html
Log:
adding files for the workshop

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-07-24 15:17:21 UTC (rev 1181)
+++ www/documentation.html	2014-10-25 16:28:46 UTC (rev 1182)
@@ -67,6 +67,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -87,9 +88,7 @@
       <br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
       <span style="color: rgb(0, 102, 0); font-weight: bold;
-        font-family: Helvetica,Arial,sans-serif;">Tutorials*</span><img
-        style="width: 80px; height: 37px; font-family:
-        Helvetica,Arial,sans-serif;" alt="" src="images/new.png">
+        font-family: Helvetica,Arial,sans-serif;">Tutorials*</span>
       <ul>
         <li><a style="font-family: Helvetica,Arial,sans-serif;"
             href="files/tutorial-basics.pdf"><span style="font-style:
@@ -213,6 +212,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -250,6 +250,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -282,6 +283,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -301,6 +303,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -315,8 +318,7 @@
       <ul style="font-family: Helvetica,Arial,sans-serif;">
         <li>Workshop "<span style="font-weight: bold;">Phylogenetics and
             population genetics using R</span>", Montpellier (March
-          2014) <img style=" width: 80px; height: 37px;" alt=""
-            src="images/new.png"></li>
+          2014)&nbsp;</li>
         <ul>
           <li>Multivariate analysis of genetic data: an introduction [<a
               href="files/montpellier/lecture-MVA.1.0.pdf">lecture</a>,
@@ -336,18 +338,40 @@
         </ul>
         <li>XXIV International Symposium of Statistics, Bogota, Colombia
           (July 2014) - <span style="font-weight: bold;">Multivariate
-            analysis of genetic data: an introduction for statisticians</span>
-          <img style=" width: 80px; height: 37px;" alt=""
-            src="images/new.png"></li>
+            analysis of genetic data: an introduction for statisticians</span>&nbsp;</li>
         <ul>
           <li><a href="files/lectureBogota2014-MVA.1.1.pdf">slides</a>
             of the lecture<br>
+            <br>
           </li>
         </ul>
+        <li>Workshop "<span style="font-weight: bold;">Genetic data
+            analysis using R</span>", Leuven (October 2014) <img
+            style=" width: 80px; height: 37px;" alt=""
+            src="file:///home/thibaut/dev/adegenet/www/adegenet/www/images/new.png"></li>
+        <ul>
+          <li>Short R refresher [lecture]<br>
+          </li>
+          <li>Introduction to phylogenetics [<a
+href="file:///home/thibaut/dev/adegenet/www/adegenet/www/files/Leuven2014/practical-introphylo.1.0.pdf">lecture</a>,
+            <a
+href="file:///home/thibaut/dev/adegenet/www/adegenet/www/files/Leuven2014/practical-introphylo.1.0.pdf">practical</a>]
+          </li>
+          <li>Multivariate analysis of genetic data: an introduction
+            [lecture, practical] </li>
+          <li>Multivariate analysis of genetic data: exploring group
+            diversity [lecture, practical]</li>
+          <li>An introduction to Genome Wise Association Studies (GWAS)
+            [lecture, practical]</li>
+          <li>Multivariate analysis of genetic data: uncovering spatial
+            structures [lecture, practical]<br>
+            <br>
+          </li>
+        </ul>
+        <ul>
+        </ul>
       </ul>
       <br style="font-family: Helvetica,Arial,sans-serif;">
-      <br style="font-family: Helvetica,Arial,sans-serif;">
-      <br style="font-family: Helvetica,Arial,sans-serif;">
       <span style="font-weight: bold; color: rgb(0, 102, 0);
         font-family: Helvetica,Arial,sans-serif;">Dirty hacks useful for
         teaching</span><br style="font-family:

Added: www/files/Leuven2014/Refresh-R.pptx
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/Refresh-R.pptx
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/lecture-MVA.1.1.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/lecture-MVA.1.1.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/lecture-MVAspatial.1.1.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/lecture-MVAspatial.1.1.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/lecture-phylo.1.3.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/lecture-phylo.1.3.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/practical-MVAgroups.1.0.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/practical-MVAgroups.1.0.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/practical-MVAintro.1.0.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/practical-MVAintro.1.0.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/practical-MVAspatial.1.0.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/practical-MVAspatial.1.0.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/practical-introphylo.1.0.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/practical-introphylo.1.0.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream


From noreply at r-forge.r-project.org  Sun Oct 26 01:29:11 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Sun, 26 Oct 2014 01:29:11 +0200 (CEST)
Subject: [adegenet-commits] r1183 - www
Message-ID: <20141025232911.889741854F2@r-forge.r-project.org>

Author: jombart
Date: 2014-10-26 01:29:11 +0200 (Sun, 26 Oct 2014)
New Revision: 1183

Modified:
   www/documentation.html
Log:
fixing links- now relative

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-25 16:28:46 UTC (rev 1182)
+++ www/documentation.html	2014-10-25 23:29:11 UTC (rev 1183)
@@ -68,6 +68,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -213,6 +214,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -251,6 +253,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -284,6 +287,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -304,6 +308,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -346,16 +351,14 @@
           </li>
         </ul>
         <li>Workshop "<span style="font-weight: bold;">Genetic data
-            analysis using R</span>", Leuven (October 2014) <img
-            style=" width: 80px; height: 37px;" alt=""
-            src="file:///home/thibaut/dev/adegenet/www/adegenet/www/images/new.png"></li>
+            analysis using R</span>", Leuven (October 2014)&nbsp;<img
+            alt="" src="images/new.png" height="37" width="80"></li>
         <ul>
           <li>Short R refresher [lecture]<br>
           </li>
           <li>Introduction to phylogenetics [<a
-href="file:///home/thibaut/dev/adegenet/www/adegenet/www/files/Leuven2014/practical-introphylo.1.0.pdf">lecture</a>,
-            <a
-href="file:///home/thibaut/dev/adegenet/www/adegenet/www/files/Leuven2014/practical-introphylo.1.0.pdf">practical</a>]
+              href="files/Leuven2014/practical-introphylo.1.0.pdf">lecture</a>,
+            <a href="files/Leuven2014/practical-introphylo.1.0.pdf">practical</a>]
           </li>
           <li>Multivariate analysis of genetic data: an introduction
             [lecture, practical] </li>


From noreply at r-forge.r-project.org  Sun Oct 26 11:49:41 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Sun, 26 Oct 2014 11:49:41 +0100 (CET)
Subject: [adegenet-commits] r1184 - www
Message-ID: <20141026104941.98481186DA3@r-forge.r-project.org>

Author: jombart
Date: 2014-10-26 11:49:41 +0100 (Sun, 26 Oct 2014)
New Revision: 1184

Modified:
   www/documentation.html
Log:
added a link to Caitlin's refresheR

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-25 23:29:11 UTC (rev 1183)
+++ www/documentation.html	2014-10-26 10:49:41 UTC (rev 1184)
@@ -69,6 +69,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -215,6 +216,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -254,6 +256,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -288,6 +291,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -309,6 +313,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -354,7 +359,8 @@
             analysis using R</span>", Leuven (October 2014)&nbsp;<img
             alt="" src="images/new.png" height="37" width="80"></li>
         <ul>
-          <li>Short R refresher [lecture]<br>
+          <li>Short R refresher [<a
+              href="files/Leuven2014/Refresh-R.pptx">lecture</a>]<br>
           </li>
           <li>Introduction to phylogenetics [<a
               href="files/Leuven2014/practical-introphylo.1.0.pdf">lecture</a>,


From noreply at r-forge.r-project.org  Sun Oct 26 13:08:18 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Sun, 26 Oct 2014 13:08:18 +0100 (CET)
Subject: [adegenet-commits] r1185 - www
Message-ID: <20141026120819.02E4218770A@r-forge.r-project.org>

Author: jombart
Date: 2014-10-26 13:08:18 +0100 (Sun, 26 Oct 2014)
New Revision: 1185

Modified:
   www/documentation.html
Log:
fixed link to lecture 1

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-26 10:49:41 UTC (rev 1184)
+++ www/documentation.html	2014-10-26 12:08:18 UTC (rev 1185)
@@ -70,6 +70,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -217,6 +218,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -257,6 +259,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -292,6 +295,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -314,6 +318,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -363,7 +368,7 @@
               href="files/Leuven2014/Refresh-R.pptx">lecture</a>]<br>
           </li>
           <li>Introduction to phylogenetics [<a
-              href="files/Leuven2014/practical-introphylo.1.0.pdf">lecture</a>,
+              href="files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,
             <a href="files/Leuven2014/practical-introphylo.1.0.pdf">practical</a>]
           </li>
           <li>Multivariate analysis of genetic data: an introduction


From noreply at r-forge.r-project.org  Mon Oct 27 00:21:18 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 00:21:18 +0100 (CET)
Subject: [adegenet-commits] r1186 - in www: . files/Leuven2014
Message-ID: <20141026232118.BAD3F187715@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 00:21:18 +0100 (Mon, 27 Oct 2014)
New Revision: 1186

Added:
   www/files/Leuven2014/Refresh-R.pdf
Modified:
   www/documentation.html
   www/files/Leuven2014/Refresh-R.pptx
Log:
added Caitlin's last modif to day 1 shit

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-26 12:08:18 UTC (rev 1185)
+++ www/documentation.html	2014-10-26 23:21:18 UTC (rev 1186)
@@ -71,6 +71,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -219,6 +220,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -260,6 +262,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -296,6 +299,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -319,6 +323,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -365,7 +370,7 @@
             alt="" src="images/new.png" height="37" width="80"></li>
         <ul>
           <li>Short R refresher [<a
-              href="files/Leuven2014/Refresh-R.pptx">lecture</a>]<br>
+              href="files/Leuven2014/Refresh-R.pdf">lecture</a>]<br>
           </li>
           <li>Introduction to phylogenetics [<a
               href="files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,

Added: www/files/Leuven2014/Refresh-R.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/Refresh-R.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Modified: www/files/Leuven2014/Refresh-R.pptx
===================================================================
(Binary files differ)


From noreply at r-forge.r-project.org  Mon Oct 27 18:37:44 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 18:37:44 +0100 (CET)
Subject: [adegenet-commits] r1187 - www/files
Message-ID: <20141027173744.5D360187527@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 18:37:44 +0100 (Mon, 27 Oct 2014)
New Revision: 1187

Modified:
   www/files/usflu.fasta
Log:
fixed accession numbers in usflu

Modified: www/files/usflu.fasta
===================================================================
--- www/files/usflu.fasta	2014-10-26 23:21:18 UTC (rev 1186)
+++ www/files/usflu.fasta	2014-10-27 17:37:44 UTC (rev 1187)
@@ -1,4 +1,4 @@
-> CY013200
+>CY013200
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -28,7 +28,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY013781
+>CY013781
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -58,7 +58,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012128
+>CY012128
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacatcatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -88,7 +88,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY013613
+>CY013613
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctaggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -118,7 +118,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012160
+>CY012160
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -148,7 +148,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012272
+>CY012272
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -178,7 +178,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY010988
+>CY010988
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacggcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -208,7 +208,7 @@
 gtcgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012288
+>CY012288
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -238,7 +238,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012568
+>CY012568
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcgaattgaagtgactaatgctactgagctggttcag
@@ -268,7 +268,7 @@
 gtcgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY013016
+>CY013016
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcggtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -298,7 +298,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcaccatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012480
+>CY012480
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -328,7 +328,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgcttgggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY010748
+>CY010748
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacatcatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -358,7 +358,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcagcatttgcatttga
-> CY011528
+>CY011528
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -388,7 +388,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgttttgttttgcttgggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY017291
+>CY017291
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -418,7 +418,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgcttgggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY012504
+>CY012504
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacagcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgatcaaattgaagtgactaatgctactgagctggttcag
@@ -448,7 +448,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY009476
+>CY009476
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -478,7 +478,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcattatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY010028
+>CY010028
 atgaagactattattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -508,7 +508,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY011128
+>CY011128
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -538,7 +538,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcattatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY010036
+>CY010036
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -568,7 +568,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgc
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY011424
+>CY011424
 atgaagactattattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -598,7 +598,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006259
+>CY006259
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -628,7 +628,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006243
+>CY006243
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -658,7 +658,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006267
+>CY006267
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -688,7 +688,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006235
+>CY006235
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -718,7 +718,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatgtcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006627
+>CY006627
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -748,7 +748,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006787
+>CY006787
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -778,7 +778,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatgtcatgt
 tttttgttttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006563
+>CY006563
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaaattccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -808,7 +808,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY002384
+>CY002384
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -838,7 +838,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY008964
+>CY008964
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaaattccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -868,7 +868,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006595
+>CY006595
 atgaagactatcattgctttgagctacatttcatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -898,7 +898,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001453
+>CY001453
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgctactgagctggttcag
@@ -928,7 +928,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001413
+>CY001413
 atgaagactatcattgctttgagctacattttatgtctggtttttgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgagtgaccaaattgaagtgactaatgctactgagctggttcag
@@ -958,7 +958,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccacatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001704
+>CY001704
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -988,7 +988,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001616
+>CY001616
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgagtgaccaaattgaagtgactaatgctactgagctggttcag
@@ -1018,7 +1018,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccacatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003785
+>CY003785
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaacacattgaagtgactaatgctactgagctggttcag
@@ -1048,7 +1048,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000737
+>CY000737
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgctactgagctggttcag
@@ -1078,7 +1078,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001365
+>CY001365
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgccactgagctggttcag
@@ -1108,7 +1108,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003272
+>CY003272
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgctactgagctggttcag
@@ -1138,7 +1138,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000705
+>CY000705
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgctactgagctggttcag
@@ -1168,7 +1168,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000657
+>CY000657
 atgaagactatcattgctttgagctacattttatgtatggttttcgctcaaaaacttccc
 gtaaatgacaacagcacggcaacgctgtgcctgggacaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccacattgaagtgactaatgctactgagctggttcag
@@ -1198,7 +1198,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY002816
+>CY002816
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -1228,7 +1228,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000584
+>CY000584
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1258,7 +1258,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001720
+>CY001720
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1288,7 +1288,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000185
+>CY000185
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1318,7 +1318,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY002328
+>CY002328
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1348,7 +1348,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000297
+>CY000297
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcatggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -1378,7 +1378,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003096
+>CY003096
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1408,7 +1408,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000545
+>CY000545
 atgaagactatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1438,7 +1438,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000289
+>CY000289
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -1468,7 +1468,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001152
+>CY001152
 atgaaggctatcattgctttgagctacattttatgcctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcatcatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtaactaatgctactgagctggttcag
@@ -1498,7 +1498,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000105
+>CY000105
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggtacag
@@ -1528,7 +1528,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY002104
+>CY002104
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggtacag
@@ -1558,7 +1558,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY001648
+>CY001648
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggtacag
@@ -1588,7 +1588,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY000353
+>CY000353
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1618,7 +1618,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcgacatttgcatttga
-> CY001552
+>CY001552
 atgaagactatcattgctttgagctacattttatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctggggcaccatgcagtgccaaacggaacg
 ctagtgaaaacaatcacgaatgaccaaattgaagtgactaatgctactgagctggttcag
@@ -1648,7 +1648,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtattgttttgctggggttcatcatgtgggcctgccaaaaaggcaacatt
 agatgcaacatttgcatttga
-> CY019245
+>CY019245
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1678,7 +1678,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY021989
+>CY021989
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1708,7 +1708,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003336
+>CY003336
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1738,7 +1738,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003664
+>CY003664
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1768,7 +1768,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY002432
+>CY002432
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaaattccc
 ggaaatgacaacagcacggcaacgctgtgcgttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1798,7 +1798,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY003640
+>CY003640
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaagaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1828,7 +1828,7 @@
 gttgagctgaagttaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY019301
+>CY019301
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1858,7 +1858,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY019285
+>CY019285
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1888,7 +1888,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY006155
+>CY006155
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1918,7 +1918,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY034116
+>CY034116
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1948,7 +1948,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EF554795
+>EF554795
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -1978,7 +1978,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY019859
+>CY019859
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgagaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2008,7 +2008,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU100713
+>EU100713
 ------------------------------------------------caaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2038,7 +2038,7 @@
 gttgagctgaagtcaggctacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttaa
-> CY019843
+>CY019843
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2068,7 +2068,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgttttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY014159
+>CY014159
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaacagcacggcaacgctgtgcctcgggcaccatgcagtaccaaacggaacg
 atagtgagaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2098,7 +2098,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU199369
+>EU199369
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2128,7 +2128,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU199254
+>EU199254
 ------------------------------------------------------------
 ---------------------------------------catgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2158,7 +2158,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> CY031555
+>CY031555
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2188,7 +2188,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU516036
+>EU516036
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttccc
 ggaaatgacaaaagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2218,7 +2218,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU516212
+>EU516212
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2248,7 +2248,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> FJ549055
+>FJ549055
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2278,7 +2278,7 @@
 gttgagctgaaatcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU779498
+>EU779498
 atgaagactatcattgctttgagctacattctatgtctggtttccgctcaaaaatttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaatcgaagttactaatgctactgagctggttcag
@@ -2308,7 +2308,7 @@
 gttgagctgaagtcaggatacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU779500
+>EU779500
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2338,7 +2338,7 @@
 gttgagctgaagtcagggtacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 agatgcaacatttgcatttga
-> CY035190
+>CY035190
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag
@@ -2368,7 +2368,7 @@
 gttgagctgaagtcagggtacaaagattggatcctatggatttcctttgccatatcatgt
 tttttgctttgtgttgctttgttggggttcatcatgtgggcctgccaaaaaggcaacatt
 aggtgcaacatttgcatttga
-> EU852005
+>EU852005
 atgaagactatcattgctttgagctacattctatgtctggttttcgctcaaaaacttcct
 ggaaatgacaacagcacggcaacgctgtgccttgggcaccatgcagtaccaaacggaacg
 atagtgaaaacaatcacgaatgaccaaattgaagttactaatgctactgagctggttcag


From noreply at r-forge.r-project.org  Mon Oct 27 19:23:16 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 19:23:16 +0100 (CET)
Subject: [adegenet-commits] r1188 - www/files/Leuven2014
Message-ID: <20141027182316.3AC97187539@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 19:23:15 +0100 (Mon, 27 Oct 2014)
New Revision: 1188

Modified:
   www/files/Leuven2014/lecture-MVA.1.1.pdf
Log:
updated lecture intro MVA

Modified: www/files/Leuven2014/lecture-MVA.1.1.pdf
===================================================================
(Binary files differ)


From noreply at r-forge.r-project.org  Mon Oct 27 20:56:08 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 20:56:08 +0100 (CET)
Subject: [adegenet-commits] r1189 - www/files/Leuven2014
Message-ID: <20141027195609.01C5918758A@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 20:56:08 +0100 (Mon, 27 Oct 2014)
New Revision: 1189

Added:
   www/files/Leuven2014/mystery1.RData
   www/files/Leuven2014/mystery2.RData
   www/files/Leuven2014/practical-introphylo.1.1.pdf
   www/files/Leuven2014/unknown1.RData
   www/files/Leuven2014/unknown2.RData
Removed:
   www/files/Leuven2014/practical-introphylo.1.0.pdf
Log:
updated practical phylo; added new simulated dataset for Day3 Leuven

Added: www/files/Leuven2014/mystery1.RData
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/mystery1.RData
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/mystery2.RData
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/mystery2.RData
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Deleted: www/files/Leuven2014/practical-introphylo.1.0.pdf
===================================================================
(Binary files differ)

Added: www/files/Leuven2014/practical-introphylo.1.1.pdf
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/practical-introphylo.1.1.pdf
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/unknown1.RData
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/unknown1.RData
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream

Added: www/files/Leuven2014/unknown2.RData
===================================================================
(Binary files differ)


Property changes on: www/files/Leuven2014/unknown2.RData
___________________________________________________________________
Added: svn:mime-type
   + application/octet-stream


From noreply at r-forge.r-project.org  Mon Oct 27 23:39:27 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 23:39:27 +0100 (CET)
Subject: [adegenet-commits] r1190 - www/files/Leuven2014
Message-ID: <20141027223927.1640418045C@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 23:39:26 +0100 (Mon, 27 Oct 2014)
New Revision: 1190

Added:
   www/files/Leuven2014/Enonsensicus1.RData
   www/files/Leuven2014/Enonsensicus2.RData
Removed:
   www/files/Leuven2014/mystery1.RData
   www/files/Leuven2014/mystery2.RData
Log:
renamed fake datasets

Copied: www/files/Leuven2014/Enonsensicus1.RData (from rev 1189, www/files/Leuven2014/mystery1.RData)
===================================================================
(Binary files differ)

Copied: www/files/Leuven2014/Enonsensicus2.RData (from rev 1189, www/files/Leuven2014/mystery2.RData)
===================================================================
(Binary files differ)

Deleted: www/files/Leuven2014/mystery1.RData
===================================================================
(Binary files differ)

Deleted: www/files/Leuven2014/mystery2.RData
===================================================================
(Binary files differ)


From noreply at r-forge.r-project.org  Mon Oct 27 23:58:17 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Mon, 27 Oct 2014 23:58:17 +0100 (CET)
Subject: [adegenet-commits] r1191 - www/files/Leuven2014
Message-ID: <20141027225817.6916C18703F@r-forge.r-project.org>

Author: jombart
Date: 2014-10-27 23:58:17 +0100 (Mon, 27 Oct 2014)
New Revision: 1191

Modified:
   www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
Log:
updated slides lecture day 3

Modified: www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
===================================================================
(Binary files differ)


From noreply at r-forge.r-project.org  Tue Oct 28 00:20:30 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue, 28 Oct 2014 00:20:30 +0100 (CET)
Subject: [adegenet-commits] r1192 - www
Message-ID: <20141027232030.7310518750F@r-forge.r-project.org>

Author: jombart
Date: 2014-10-28 00:20:30 +0100 (Tue, 28 Oct 2014)
New Revision: 1192

Modified:
   www/documentation.html
Log:
unsure what this change is..

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-27 22:58:17 UTC (rev 1191)
+++ www/documentation.html	2014-10-27 23:20:30 UTC (rev 1192)
@@ -72,6 +72,8 @@
 
 
 
+
+
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       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -221,6 +223,8 @@
 
 
 
+
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -263,6 +267,8 @@
 
 
 
+
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -300,6 +306,8 @@
 
 
 
+
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -324,6 +332,8 @@
 
 
 
+
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -374,10 +384,12 @@
           </li>
           <li>Introduction to phylogenetics [<a
               href="files/Leuven2014/lecture-phylo.1.3.pdf">lecture</a>,
-            <a href="files/Leuven2014/practical-introphylo.1.0.pdf">practical</a>]
+            <a href="files/Leuven2014/practical-introphylo.1.1.pdf">practical</a>]
           </li>
-          <li>Multivariate analysis of genetic data: an introduction
-            [lecture, practical] </li>
+          <li>Multivariate analysis of genetic data: an introduction [<a
+              href="files/Leuven2014/lecture-MVA.1.1.pdf">lecture</a>, <a
+              href="files/Leuven2014/practical-MVAintro.1.0.pdf">practical</a>]
+          </li>
           <li>Multivariate analysis of genetic data: exploring group
             diversity [lecture, practical]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)


From noreply at r-forge.r-project.org  Tue Oct 28 21:05:02 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Tue, 28 Oct 2014 21:05:02 +0100 (CET)
Subject: [adegenet-commits] r1193 - www/files/Leuven2014
Message-ID: <20141028200502.7A085187690@r-forge.r-project.org>

Author: jombart
Date: 2014-10-28 21:05:02 +0100 (Tue, 28 Oct 2014)
New Revision: 1193

Added:
   www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf
   www/files/Leuven2014/practical-MVAgroups.1.2.pdf
Modified:
   www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
Log:
added new practical for DAPC; updated the lecture

Modified: www/files/Leuven2014/lecture-MVAgroups.1.1.pdf
===================================================================
(Binary files differ)

Added: www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf
===================================================================
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From noreply at r-forge.r-project.org  Wed Oct 29 08:01:25 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Wed, 29 Oct 2014 08:01:25 +0100 (CET)
Subject: [adegenet-commits] r1194 - www
Message-ID: <20141029070125.99ED5183DE2@r-forge.r-project.org>

Author: jombart
Date: 2014-10-29 08:01:24 +0100 (Wed, 29 Oct 2014)
New Revision: 1194

Modified:
   www/documentation.html
Log:
Changes now seen by svn the first time! Links to lecture and practicals

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-28 20:05:02 UTC (rev 1193)
+++ www/documentation.html	2014-10-29 07:01:24 UTC (rev 1194)
@@ -74,6 +74,8 @@
 
 
 
+
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -225,6 +227,8 @@
 
 
 
+
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -269,6 +273,8 @@
 
 
 
+
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -308,6 +314,8 @@
 
 
 
+
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -334,6 +342,8 @@
 
 
 
+
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -376,7 +386,7 @@
           </li>
         </ul>
         <li>Workshop "<span style="font-weight: bold;">Genetic data
-            analysis using R</span>", Leuven (October 2014)&nbsp;<img
+            analysis using R</span>" - Leuven (October 2014)&nbsp;<img
             alt="" src="images/new.png" height="37" width="80"></li>
         <ul>
           <li>Short R refresher [<a
@@ -391,7 +401,9 @@
               href="files/Leuven2014/practical-MVAintro.1.0.pdf">practical</a>]
           </li>
           <li>Multivariate analysis of genetic data: exploring group
-            diversity [lecture, practical]</li>
+            diversity [<a
+              href="files/Leuven2014/lecture-MVAgroups.1.1.pdf">lecture</a>,
+            <a href="files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
             [lecture, practical]</li>
           <li>Multivariate analysis of genetic data: uncovering spatial


From noreply at r-forge.r-project.org  Wed Oct 29 19:18:43 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Wed, 29 Oct 2014 19:18:43 +0100 (CET)
Subject: [adegenet-commits] r1195 - www/files/Leuven2014
Message-ID: <20141029181843.34DD1187575@r-forge.r-project.org>

Author: jombart
Date: 2014-10-29 19:18:42 +0100 (Wed, 29 Oct 2014)
New Revision: 1195

Modified:
   www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf
Log:
adding fixed version of all cmd practical on groups

Modified: www/files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf
===================================================================
(Binary files differ)


From noreply at r-forge.r-project.org  Wed Oct 29 19:20:42 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Wed, 29 Oct 2014 19:20:42 +0100 (CET)
Subject: [adegenet-commits] r1196 - www
Message-ID: <20141029182042.17F5418757C@r-forge.r-project.org>

Author: jombart
Date: 2014-10-29 19:20:41 +0100 (Wed, 29 Oct 2014)
New Revision: 1196

Modified:
   www/documentation.html
Log:
added link to practical with solutions

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-29 18:18:42 UTC (rev 1195)
+++ www/documentation.html	2014-10-29 18:20:41 UTC (rev 1196)
@@ -76,6 +76,7 @@
 
 
 
+
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       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -229,6 +230,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -275,6 +277,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -316,6 +319,7 @@
 
 
 
+
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         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -344,6 +348,7 @@
 
 
 
+
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               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -403,7 +408,10 @@
           <li>Multivariate analysis of genetic data: exploring group
             diversity [<a
               href="files/Leuven2014/lecture-MVAgroups.1.1.pdf">lecture</a>,
-            <a href="files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>]</li>
+            <a href="files/Leuven2014/practical-MVAgroups.1.2.pdf">practical</a>,
+            <a
+              href="files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
+              all commands</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
             [lecture, practical]</li>
           <li>Multivariate analysis of genetic data: uncovering spatial


From noreply at r-forge.r-project.org  Thu Oct 30 00:31:31 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Thu, 30 Oct 2014 00:31:31 +0100 (CET)
Subject: [adegenet-commits] r1197 - in www: . files/Leuven2014
Message-ID: <20141029233132.00C6C1877F7@r-forge.r-project.org>

Author: jombart
Date: 2014-10-30 00:31:31 +0100 (Thu, 30 Oct 2014)
New Revision: 1197

Added:
   www/files/Leuven2014/Lecture-Day4- Genome-Wide Association Studies.pptx
Modified:
   www/documentation.html
Log:
added Caitie's lecture

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-29 18:20:41 UTC (rev 1196)
+++ www/documentation.html	2014-10-29 23:31:31 UTC (rev 1197)
@@ -413,7 +413,9 @@
               href="files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
               all commands</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
-            [lecture, practical]</li>
+            [<a
+href="files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
+            practical]</li>
           <li>Multivariate analysis of genetic data: uncovering spatial
             structures [lecture, practical]<br>
             <br>

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===================================================================
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From noreply at r-forge.r-project.org  Thu Oct 30 10:13:51 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Thu, 30 Oct 2014 10:13:51 +0100 (CET)
Subject: [adegenet-commits] r1198 - in www: . files/Leuven2014
Message-ID: <20141030091351.5B1F31877AF@r-forge.r-project.org>

Author: jombart
Date: 2014-10-30 10:13:50 +0100 (Thu, 30 Oct 2014)
New Revision: 1198

Added:
   www/files/Leuven2014/practical-GWAS.pdf
Modified:
   www/documentation.html
Log:
added Caitlin's GWAS practical; added link to it

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-29 23:31:31 UTC (rev 1197)
+++ www/documentation.html	2014-10-30 09:13:50 UTC (rev 1198)
@@ -77,6 +77,7 @@
 
 
 
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@@ -231,6 +232,7 @@
 
 
 
+
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             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -278,6 +280,7 @@
 
 
 
+
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             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -320,6 +323,7 @@
 
 
 
+
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         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -349,6 +353,7 @@
 
 
 
+
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@@ -411,11 +416,12 @@
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             <a
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+
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           <li>An introduction to Genome Wise Association Studies (GWAS)
             [<a
 href="files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
-            practical]</li>
+            <a href="files/Leuven2014/practical-GWAS.pdf">practical</a>]</li>
           <li>Multivariate analysis of genetic data: uncovering spatial
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[TRUNCATED]

To get the complete diff run:
    svnlook diff /svnroot/adegenet -r 1198

From noreply at r-forge.r-project.org  Thu Oct 30 22:13:29 2014
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Thu, 30 Oct 2014 22:13:29 +0100 (CET)
Subject: [adegenet-commits] r1199 - www
Message-ID: <20141030211329.E56681868B2@r-forge.r-project.org>

Author: jombart
Date: 2014-10-30 22:13:29 +0100 (Thu, 30 Oct 2014)
New Revision: 1199

Modified:
   www/documentation.html
Log:
added links to spatial stuff

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2014-10-30 09:13:50 UTC (rev 1198)
+++ www/documentation.html	2014-10-30 21:13:29 UTC (rev 1199)
@@ -78,6 +78,7 @@
 
 
 
+
         engine</a><span style="font-family: Helvetica,Arial,sans-serif;">.
       </span><br style="font-family: Helvetica,Arial,sans-serif;">
       <br style="font-family: Helvetica,Arial,sans-serif;">
@@ -233,6 +234,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to phylogenetics</span>
           (last updated on the 15/13/2013)</li>
@@ -281,6 +283,7 @@
 
 
 
+
             Epidemiology</span> / <i>Public Health</i>: <span
             style="font-weight: bold;">Introduction to multivariate
             analysis / bacterial GWAS</span> (last updated on the
@@ -324,6 +327,7 @@
 
 
 
+
           </b><b><i>outbreaker</i></b></li>
         <ul>
           <li><a href="files/GenEpiTalk.1.0.pdf">talk</a></li>
@@ -354,6 +358,7 @@
 
 
 
+
             analysis using <span style="font-style: italic;">ape,
               adegenet,</span> </span><b>and </b><b><i>outbreaker</i></b></li>
         <ul>
@@ -417,13 +422,16 @@
             <a
               href="files/Leuven2014/practical-MVAgroups-allCmd.1.2.pdf">practical
 
+
               all commands</a>]</li>
           <li>An introduction to Genome Wise Association Studies (GWAS)
             [<a
 href="files/Leuven2014/Lecture-Day4-%20Genome-Wide%20Association%20Studies.pptx">lecture</a>,
             <a href="files/Leuven2014/practical-GWAS.pdf">practical</a>]</li>
           <li>Multivariate analysis of genetic data: uncovering spatial
-            structures [lecture, practical]<br>
+            structures [<a
+              href="files/Leuven2014/lecture-MVAspatial.1.1.pdf">lecture</a>,
+            <a href="files/Leuven2014/practical-MVAspatial.1.0.pdf">practical</a>]<br>
             <br>
           </li>
         </ul>