The
- adegenet
- forum
+ bold;">The adegenet forum
For all discussions/questions related to adegenet.
- one address: adegenet-forum AT lists DOT r-forge DOT r-project
DOT org
@@ -45,117 +47,95 @@
before sending a post
- use the
search engine to look for information in
- the
- archives
+ the archives
- alternatively, you can
browse
- the
- archives of adegenet forum
+
+ the archives of adegenet forum
- the most frequent questions and their answers are listed at the
bottom of this page.
- For more general questions
about
-the
-analysis
-of
-genetic
-markers
-in
-R,
-use
- the
For more general questions about
+ the
+ analysis
+ of
+ genetic
+ markers
+ in
+ R,
+ use the R-sig-genetics
mailing list.
- Want
- to track the evolution of the package from the inside ?
+ 10px;"> Want to track the evolution of the package from the
+ inside ?
Subscribe to the commit mailing-list
here
- Contributions, direct contact with the author: t.jombart AT
- imperial
- DOT ac DOT uk
+ 10px;"> Contributions, direct contact with the author: t.jombart
+ AT imperial DOT ac DOT uk
Please,
- do use
- the adegenet forum to
- ask questions concerning the
+
+ do use the adegenet forum to ask questions concerning the
package. Browsable archives of this mailing list allow
- other
- users to
- benefit from previous answers.
+ other users to benefit from previous answers.
Frequently
Asked Questions (and their answers):
# 1: How do I know which R
- version
- / adegenet version I'm using?
+ version / adegenet version I'm using?
For R version, type:
-
R.version
-
- For adegenet version, type:
-
packageDescription("adegenet",
- field="Version")
+ R.version
+ For adegenet version, type:
+ packageDescription("adegenet", field="Version")
+
# 2: Loading adegenet fails
- on
- windows Vista; what's going on?
+ on windows Vista; what's going on?
This is likely caused by a wrong installation of the package, or
- not
- installing the dependencies.
+ not installing the dependencies.
Start R in 'Administrator' mode (right click on R's icon ->
- "start
- as administrator"), then type:
-
install.packages("adegenet",
- dep=TRUE)
+ "start as administrator"), then type:
+ install.packages("adegenet", dep=TRUE)
# 3: Help pages are not found
- on
- windows...
+ on windows...
This is likely because your R installation did not include help
- pages
- in html. You need to specify you want to use help in text mode.
- This is
- achieved by typing:
-
options("help_type"="text")
-
-
- # 4: Loading adegenet
- fails
+ pages in html. You need to specify you want to use help in text
+ mode. This is achieved by typing:
+ options("help_type"="text")
+
+
+ # 4: Loading adegenet fails
with this error (R >= 2.13.0):
Error in
- as.environment(pos) : no
- item called "newtable" on the search list
+ as.environment(pos) : no item called "newtable" on the
+ search list
This is because the package '
graph',
- on
- which
-
adegenet depends,
- has been removed from CRAN. You need to install graph from
- bioconductor
- first, and then install adegenet:
-
source("http://bioconductor.org/biocLite.R")
biocLite("graph")
install.packages("adegenet", dep=TRUE)
-
-
+
+ on which
adegenet
+ depends, has been removed from CRAN. You need to install graph
+ from bioconductor first, and then install adegenet:
+
source("http://bioconductor.org/biocLite.R")
biocLite("graph")
install.packages("adegenet", dep=TRUE)
+
+
