From noreply at r-forge.r-project.org Mon Oct 7 12:44:50 2013 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Mon, 7 Oct 2013 12:44:50 +0200 (CEST) Subject: [adegenet-commits] r1154 - www Message-ID: <20131007104450.8B6F71849C3@r-forge.r-project.org> Author: jombart Date: 2013-10-07 12:44:50 +0200 (Mon, 07 Oct 2013) New Revision: 1154 Modified: www/documentation.html Log: Added new section for workshop in Stockholm Modified: www/documentation.html =================================================================== --- www/documentation.html 2013-08-09 12:27:14 UTC (rev 1153) +++ www/documentation.html 2013-10-07 10:44:50 UTC (rev 1154) @@ -45,6 +45,7 @@ + engine.

@@ -52,6 +53,7 @@ Manuals
- the adegenet manual (pdf), + which compiles all the manpages of the package.

@@ -113,6 +115,7 @@ + 1 [version with all commands]
> practical @@ -127,6 +130,7 @@ + 2 [version with all commands]
> practical @@ -141,6 +145,7 @@ + 3

- MRC methodological session: Introduction to phylogenetics:
@@ -159,6 +164,7 @@ href="files/fakeOutbreak/cases.csv">cases.csv, alignment.fa, update.csv)
+
- Imperial College - Master Modern @@ -170,14 +176,14 @@ + Epidemiology / Public Health: Introduction to phylogenetics.

+ style="font-weight: bold;">Introduction to phylogenetics.
(last updated on the 15/13/2013)
> practical
> data (usflu.fasta, usflu.annot.csv)
+
- Imperial College - Master Modern @@ -189,10 +195,10 @@ + Epidemiology / Public Health: Introduction to multivariate analysis - / bacterial GWAS.

+ / bacterial GWAS.
(last updated on the 21/13/2013)
> lecture
@@ -206,8 +212,8 @@ - outbreaker

+ + outbreaker
    > talk
    > practical
    > data (alignment.fa, update.csv)

+ - Molecular Outbreak Epidemiology workshop, Stockholm, Sweden + (November 2013) - Outbreak + analysis using ape, adegenet, + and outbreaker

+     > talk
+     > practical
+     > data (cases.csv, alignment.fa, update.csv)

+
Dirty hacks useful for teaching
- a small hack for installing R packages on computers without @@ -228,9 +247,8 @@ - README

+ + README

Mailing From noreply at r-forge.r-project.org Mon Oct 7 14:17:08 2013 From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org) Date: Mon, 7 Oct 2013 14:17:08 +0200 (CEST) Subject: [adegenet-commits] r1155 - in www: . files Message-ID: <20131007121708.9565D184289@r-forge.r-project.org> Author: jombart Date: 2013-10-07 14:17:08 +0200 (Mon, 07 Oct 2013) New Revision: 1155 Added: www/files/outbreakPractical.1.4.pdf Modified: www/documentation.html Log: added new version of the outbreak reconstruction practical Modified: www/documentation.html =================================================================== --- www/documentation.html 2013-10-07 10:44:50 UTC (rev 1154) +++ www/documentation.html 2013-10-07 12:17:08 UTC (rev 1155) @@ -46,6 +46,7 @@ + engine.

@@ -54,6 +55,7 @@ - the adegenet manual (pdf), + which compiles all the manpages of the package.

@@ -116,6 +118,7 @@ + 1 [version with all commands]
    > practical @@ -131,6 +134,7 @@ + 2 [version with all commands]
    > practical @@ -146,6 +150,7 @@ + 3

- MRC methodological session: Introduction to phylogenetics:
@@ -177,6 +182,7 @@ + Epidemiology / Public Health: Introduction to phylogenetics.
(last updated on the 15/13/2013)
@@ -196,6 +202,7 @@ + Epidemiology / Public Health: Introduction to multivariate analysis / bacterial GWAS.
@@ -213,6 +220,7 @@ + outbreaker
    > talk
    > practical
@@ -228,7 +236,7 @@ 80px; height: 37px;" alt="new" src="images/new.png" height="37" width="80">
    > talk
-     > practical
+     > practical
    > data (cases.csv, alignment.fa, README

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