[adegenet-commits] r1072 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Feb 14 15:32:59 CET 2013
Author: jombart
Date: 2013-02-14 15:32:58 +0100 (Thu, 14 Feb 2013)
New Revision: 1072
Modified:
www/literature.html
Log:
+1ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2013-02-08 18:05:08 UTC (rev 1071)
+++ www/literature.html 2013-02-14 14:32:58 UTC (rev 1072)
@@ -50,6 +50,7 @@
href="http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr521">link
to
+
the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
<br style="color: rgb(0, 153, 0);">
<br>
@@ -69,10 +70,12 @@
to the journal's pdf - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
+
abstract</a>]<br>
<br>
- the paper presenting the <span style="font-style: italic;">spatial
+
principal component analysis</span> (<span style="font-style:
italic;">sPCA</span>, function <span style="font-family:
monospace; color: rgb(255, 0, 0);">spca</span>), global and
@@ -80,6 +83,7 @@
0, 0);">global.rtest</span> and <span style="font-family:
monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
<b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b></b>(2008)<b></b>Revealing
+
cryptic spatial patterns in genetic variability by a new
multivariate method. <span style="font-style: italic;">Heredity</span>
<span style="font-weight: bold;">101</span>: 92-103. doi:
@@ -88,6 +92,7 @@
on the journal's website - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
+
abstract</a>]<br>
</div>
<br>
@@ -98,6 +103,7 @@
style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
and
+
simulations of genealoies of haplotypes (<span style="font-family:
monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
@@ -108,6 +114,7 @@
- the paper introducing the <span style="font-style: italic;">Discriminant
Analysis
+
of Principal Components</span> (<span style="font-style:
italic;">DAPC</span>, functions <span style="font-family:
monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -129,16 +136,16 @@
<br>
[1] Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan
M, Kempenaers B, Allainé D (2007) The<span style="color:
- rgb(0, 0, 0);">genetic
- similarity between pair members influences the frequency of
- extrapair paternity in alpine marmots</span>. <i>Animal
- Behaviour</i><i></i><span style="font-weight: bold;">76</span>:
- 87-95.<br>
+ rgb(0, 0, 0);">genetic similarity between pair members
+ influences the frequency of extrapair paternity in alpine
+ marmots</span>. <i>Animal Behaviour</i><i></i><span
+ style="font-weight: bold;">76</span>: 87-95.<br>
<br>
[2] Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi
VS, Smith DG (2008) Pyrosequencing as a method for SNP
identification in the rhesus macaque (<em>Macaca mulatta</em>). <span
class="citation-abbreviation"><span style="font-style: italic;">BMC
+
Genomics</span></span><span class="citation-publication-date"></span><span
style="font-weight: bold;" class="citation-volume">9</span><span
class="citation-issue"></span>: 256.<br>
@@ -155,13 +162,16 @@
[4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde
AI (2009). Hybridization between escaped domestic and wild
American mink (<span style="font-style: italic;">Neovison vison</span>).
+
<span style="font-style: italic;">Molecular Ecology</span> <span
style="font-weight: bold;">18</span>: 1175-1186.<br>
<br>
[5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009).
Age-specific effect of heterozygosity on survival in alpine
marmots, <span class="i"><span style="font-style: italic;">Marmota
+
marmota</span>.</span><span style="font-style: italic;">Molecular
+
Ecology</span> <span style="font-weight: bold;">18</span>:
1491-1503.<br>
<br>
@@ -202,6 +212,7 @@
Colin J. Garroway and Joanna R. Freeland
(2010) Molecular data provide strong evidence of natural
hybridization between native and introduced lineages of <i>Phragmites
+
australis</i> in North America. <span style="font-style:
italic;">Biological Invasions</span>. doi:
10.1007/s10530-010-9699-6.<br>
@@ -346,11 +357,13 @@
breed shows a significant contribution from British and Irish
native mares. <a style="font-style: italic;" title="Biology
letters.">Biol Lett.</a><span style="font-style: italic;"></span>2010
+
Oct 6. [Epub ahead of print]<br>
</p>
<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
allochronic speciation in the pine processionary moth (<em>Thaumetopoea
+
pityocampa</em>, Lepidoptera, Notodontidae). <span
style="font-style: italic;">Journal of Evolutionary Biology</span>,
no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
@@ -361,15 +374,18 @@
mediterranean bluefin tuna: review of existing data, on-going
studies and perspectives. <span style="font-style: italic;">Collect.
+
Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
<p class="intro">[26] <span class="citation_author">Vandewoestijne
+
S, </span> <span class="citation_author">Van Dyck H, </span>
<span class="citation_date">2010</span> <span
class="citation_article_title">Population Genetic
Differences along a Latitudinal Cline between Original and
Recently Colonized Habitat in a Butterfly. </span> <span
style="font-style: italic;" class="citation_journal_title">PLoS
+
ONE</span><span class="citation_issue">5(11):</span> <span
class="citation_start_page">e13810.</span> <span
class="citation_doi">doi:10.1371/journal.pone.0013810<br>
@@ -387,6 +403,7 @@
population genetic data for Chinese and Indian rhesus macaques
(<i>Macaca mulatta</i>). <span style="font-style: italic;">Primates:
+
</span><span class="doi"><span class="label">DOI:</span> <span
class="value">10.1007/s10329-010-0232-4<br>
</span></span></p>
@@ -441,6 +458,7 @@
J., NEWMAN, S. J. and Van HERWERDEN, L. (2011), Limited
ecological population connectivity suggests low demands on
self-recruitment in a tropical inshore marine fish (<em>Eleutheronema
+
tetradactylum</em>: Polynemidae). Molecular Ecology,
20: no. doi: 10.1111/j.1365-294X.2011.05097.x<br>
</p>
@@ -453,6 +471,7 @@
class="citation_date">2011</span> <span
class="citation_article_title">Low Diversity <i>Cryptococcus
+
neoformans</i> Variety <i>grubii</i> Multilocus Sequence
Types from Thailand Are Consistent with an Ancestral African
Origin.</span> <span class="citation_journal_title">PLoS
@@ -471,6 +490,7 @@
class="hit">Devillard</span>, M.P. Demar, B. de Thoisy, H.
Bonnabau, F. Collinet, R. Boukhari, D. Blanchet, S. Simon, B.
Carme, M.-L. Dardé (<span style="font-style: italic;">in
+
press</span>) Human impact on genetic diversity of <span
style="font-style: italic;">Toxoplasma gondii</span>:
Example of the anthropized environment from French Guiana. <br>
@@ -492,6 +512,7 @@
Jindřich ; Plačková, Ivana ;Mráz, Patrik (2001)
Allozyme Variation in Diploid, Polyploid and Mixed-Ploidy
Populations of the <span style="font-style: italic;">Pilosella
+
alpicola</span> Group (Asteraceae): Relation to Morphology,
Origin of Polyploids and Breeding System . Folia Geobotanica:
1-24. Doi: 10.1007/s12224-011-9102-0<br>
@@ -652,9 +673,8 @@
[67] R.M. Fewster, S.D. Miller, and J. Ritchie (2011) DNA
profiling – a management tool for rat eradication. Pages 426-431
In: Veitch, C. R.; Clout, M. N. and Towns, D. R. (eds.). <span
- style="font-style: italic;">Island
- invasives: eradication and management</span>. 426 Gland,
- Switzerland.<br>
+ style="font-style: italic;">Island invasives: eradication and
+ management</span>. 426 Gland, Switzerland.<br>
<br>
[68] Monteil, C. L., Guilbaud, C., Glaux, C., Lafolie, F.,
Soubeyrand, S. and Morris, C. E. (2011), Emigration of the plant
@@ -702,6 +722,7 @@
genetic signal of current connectivity among populations.
GENETICA - <span style="font-style: italic;">Online first. </span>DOI:
+
10.1007/s10709-012-9640-2<br>
<br>
[76] Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright,
@@ -1150,7 +1171,13 @@
Kolfschoten, Michael Hofreiter and Klaas Vrieling (2013)
Losing Ground: Past history and future fate of Arctic small
mammals in a changing climate. Global Change Biology. doi:
- 10.1111/gcb.12157</p>
+ 10.1111/gcb.12157<br>
+ </p>
+ <p>[152] Koen EL, Bowman J, Garroway CJ, Wilson PJ (2013) The
+ Sensitivity of Genetic Connectivity Measures to Unsampled and
+ Under-Sampled Sites. PLoS ONE 8(2): e56204.
+ doi:10.1371/journal.pone.0056204<br>
+ </p>
<br>
<br>
<p></p>
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