[adegenet-commits] r1070 - www
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Wed Feb 6 11:51:39 CET 2013
Author: jombart
Date: 2013-02-06 11:51:39 +0100 (Wed, 06 Feb 2013)
New Revision: 1070
Modified:
www/literature.html
Log:
+several ref
Modified: www/literature.html
===================================================================
--- www/literature.html 2013-01-31 11:49:46 UTC (rev 1069)
+++ www/literature.html 2013-02-06 10:51:39 UTC (rev 1070)
@@ -21,8 +21,8 @@
<br>
<br>
<br>
- <div style="margin-left: 40px;">
- <span style="text-decoration: underline;">To cite adegenet:</span><br>
+ <div style="margin-left: 40px;"> <span style="text-decoration:
+ underline;">To cite adegenet:</span><br>
<br>
<span style="color: rgb(0, 153, 0);">Jombart T</span><span
style="color: rgb(0, 153, 0);">.</span><span style="color:
@@ -30,9 +30,8 @@
rgb(0, 153, 0);"></span><span style="color: rgb(0, 153, 0);">2008)</span><span
style="font-weight: bold; color: rgb(0, 153, 0);"></span><span
style="color: rgb(0, 153, 0);">adegenet: a R package for the
- multivariate
- analysis of genetic markers. </span><span style="font-style:
- italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
+ multivariate analysis of genetic markers. </span><span
+ style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
style="color: rgb(0, 153, 0);"></span><span style="font-weight:
bold; color: rgb(0, 153, 0);">24</span><span style="color:
rgb(0, 153, 0);">: 1403-1405. doi: 10.1093/bioinformatics/btn129
@@ -41,17 +40,16 @@
style="color: rgb(0, 153, 0);">to a free pdf]</span><br>
<br>
<span style="color: rgb(0, 153, 0);">Jombart T. and Ahmed I.
- (2011)
- </span><span style="font-style: italic; color: rgb(0, 153, 0);">adegenet
- 1.3-1</span><span style="color: rgb(0, 153, 0);">: new tools for
- the
- analysis of genome-wide SNP data. </span><span
+ (2011) </span><span style="font-style: italic; color: rgb(0,
+ 153, 0);">adegenet 1.3-1</span><span style="color: rgb(0, 153,
+ 0);">: new tools for the analysis of genome-wide SNP data. </span><span
style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
style="color: rgb(0, 153, 0);">. doi:
- 10.1093/bioinformatics/btr521
- [</span><a style="color: rgb(0, 153, 0);"
+ 10.1093/bioinformatics/btr521 [</span><a style="color: rgb(0,
+ 153, 0);"
href="http://bioinformatics.oxfordjournals.org/content/early/2011/09/16/bioinformatics.btr521">link
to
+
the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
<br style="color: rgb(0, 153, 0);">
<br>
@@ -60,74 +58,69 @@
<span style="text-decoration: underline;">Related publications:<br>
<br style="text-decoration: underline;">
</span>- a review of applications of multivariate analyses to
- genetic markers
- data:<br>
+ genetic markers data:<br>
<b>Jombart T</b>, Pontier D, Dufour AB. (2009) <span
style="font-style: italic;"></span> Genetic markers in the
- playground of
- multivariate analysis. <span style="font-style: italic;">Heredity
- </span><span style="font-weight: bold;">102</span>: 330-341.
- doi:10.1038/hdy.2008.130<span style="font-style: italic;">. </span>[<a
+ playground of multivariate analysis. <span style="font-style:
+ italic;">Heredity </span><span style="font-weight: bold;">102</span>:
+ 330-341. doi:10.1038/hdy.2008.130<span style="font-style: italic;">.
+ </span>[<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy2008130a.pdf">link</a>
to the journal's pdf - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
+
abstract</a>]<br>
<br>
- the paper presenting the <span style="font-style: italic;">spatial
- principal
- component analysis</span> (<span style="font-style: italic;">sPCA</span>,
- function <span style="font-family: monospace; color: rgb(255, 0,
- 0);">spca</span>), global and
+
+ principal component analysis</span> (<span style="font-style:
+ italic;">sPCA</span>, function <span style="font-family:
+ monospace; color: rgb(255, 0, 0);">spca</span>), global and
local tests (<span style="font-family: monospace; color: rgb(255,
- 0, 0);">global.rtest</span>
- and <span style="font-family: monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
- <b>Jombart T, </b>Devillard S, Dufour AB, Pontier
- D<b></b>(2008)<b></b>Revealing cryptic spatial patterns in genetic
- variability
- by a new multivariate method. <span style="font-style:
- italic;">Heredity</span> <span style="font-weight: bold;">101</span>:
- 92-103. doi: 10.1038/hdy.2008.34 [<a
+ 0, 0);">global.rtest</span> and <span style="font-family:
+ monospace; color: rgb(255, 0, 0);">local.rtest</span>):<br>
+ <b>Jombart T, </b>Devillard S, Dufour AB, Pontier D<b></b>(2008)<b></b>Revealing
+ cryptic spatial patterns in genetic variability by a new
+ multivariate method. <span style="font-style: italic;">Heredity</span>
+ <span style="font-weight: bold;">101</span>: 92-103. doi:
+ 10.1038/hdy.2008.34 [<a
href="http://www.nature.com/hdy/journal/vaop/ncurrent/pdf/hdy200834a.pdf">link</a>
on the journal's website - <a target="_new"
href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
+
abstract</a>]<br>
</div>
<br>
- <div style="margin-left: 40px;">
- <span style="font-family: monospace; font-weight: bold;"></span><span
- style="font-family: monospace; font-weight: bold;"></span>- the
- paper
- presenting the <span style="font-style: italic;">SeqTrack </span>algorithm
- (<span style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
+ <div style="margin-left: 40px;"> <span style="font-family:
+ monospace; font-weight: bold;"></span><span style="font-family:
+ monospace; font-weight: bold;"></span>- the paper presenting the
+ <span style="font-style: italic;">SeqTrack </span>algorithm (<span
+ style="font-family: monospace; color: rgb(255, 0, 0);">seqTrack</span>),
and
+
simulations of genealoies of haplotypes (<span style="font-family:
monospace; color: rgb(255, 0, 0);">haploGen</span>):<br>
<b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
- Reconstructing disease
- outbreaks from genetic data: a graph approach. <span
- style="font-style: italic;">Heredity</span>. Doi:
+ Reconstructing disease outbreaks from genetic data: a graph
+ approach. <span style="font-style: italic;">Heredity</span>. Doi:
10.1038/hdy.2010.78<br>
<br>
- the paper introducing the <span style="font-style: italic;">Discriminant
Analysis
+
of Principal Components</span> (<span style="font-style:
italic;">DAPC</span>, functions <span style="font-family:
monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
</span>and <span style="font-family: monospace; color: rgb(255,
0, 0);">dapc</span>):<br>
<b>Jombart T</b>, Devillard S and Balloux F <b></b>(2010)
- Discriminant analysis
- of principal components: a new method for the analysis of
- genetically
- structured populations. <i>BMC Genetics</i>
- <strong>11</strong><strong>:</strong>94.
- <span>doi:10.1186/1471-2156-11-94</span> [<a
- href="files/DAPCpaper.pdf">free
- pdf</a>] [<a href="http://www.biomedcentral.com/1471-2156/11/94">free
- html
+ Discriminant analysis of principal components: a new method for
+ the analysis of genetically structured populations. <i>BMC
+ Genetics</i> <strong>11</strong><strong>:</strong>94. <span>doi:10.1186/1471-2156-11-94</span>
+ [<a href="files/DAPCpaper.pdf">free pdf</a>] [<a
+ href="http://www.biomedcentral.com/1471-2156/11/94">free html
version</a>] [<a href="reviewDAPC.html">evaluation by Laurent
- Excoffier on
- F1000</a>] <br>
+ Excoffier on F1000</a>] <br>
<br>
<br>
<br>
@@ -135,111 +128,90 @@
adegenet:</span><br style="text-decoration: underline;">
<br>
[1] Cohas A, Yoccoz NG, Bonenfant C, Goossens B, Genton C, Galan
- M, Kempenaers
- B, Allainé D (2007) The<span style="color: rgb(0, 0, 0);">genetic
-similarity
- between pair members influences the frequency of extrapair
- paternity
- in alpine marmots</span>. <i>Animal Behaviour</i><i></i><span
- style="font-weight: bold;">76</span>: 87-95.<br>
+ M, Kempenaers B, Allainé D (2007) The<span style="color:
+ rgb(0, 0, 0);">genetic
+ similarity between pair members influences the frequency of
+ extrapair paternity in alpine marmots</span>. <i>Animal
+ Behaviour</i><i></i><span style="font-weight: bold;">76</span>:
+ 87-95.<br>
<br>
[2] Satkoski JA, Malhi RS, Kanthaswamy S, Tito RY, Malladi
- VS, Smith DG (2008)
- Pyrosequencing as a method for SNP identification in the rhesus
- macaque
- (<em>Macaca mulatta</em>). <span class="citation-abbreviation"><span
- style="font-style: italic;">BMC Genomics</span></span><span
- class="citation-publication-date"></span><span
+ VS, Smith DG (2008) Pyrosequencing as a method for SNP
+ identification in the rhesus macaque (<em>Macaca mulatta</em>). <span
+ class="citation-abbreviation"><span style="font-style: italic;">BMC
+ Genomics</span></span><span class="citation-publication-date"></span><span
style="font-weight: bold;" class="citation-volume">9</span><span
class="citation-issue"></span>: 256.<br>
- <div>
- <span class="citation-flpages"><br>
+ <div> <span class="citation-flpages"><br>
[3] </span>Kanthaswamy S, Satkoski J, George D, Kou A,
- Erickson BJ, Smith DG.
- (2008). Interspecies hybridization and the stratification of
- nuclear genetic
- variation of rhesus (<span style="font-style: italic;">Macaca
- mulatta</span>) and long-tailed macaques (<span
- style="font-style: italic;">Macaca </span><span
+ Erickson BJ, Smith DG. (2008). Interspecies hybridization and
+ the stratification of nuclear genetic variation of rhesus (<span
+ style="font-style: italic;">Macaca mulatta</span>) and
+ long-tailed macaques (<span style="font-style: italic;">Macaca </span><span
style="font-style: italic;">fascicularis</span>). <span
style="font-style: italic;">Int J Primatol</span> <span
style="font-weight: bold;">29</span>: 1295-1311.<br>
<br>
[4] Kidd, AG, Bowman J, Lesbarrères D, Schulte-Hostedde
- AI (2009).
- Hybridization between escaped domestic and wild American mink (<span
- style="font-style: italic;">Neovison vison</span>). <span
- style="font-style: italic;">Molecular Ecology</span> <span
+ AI (2009). Hybridization between escaped domestic and wild
+ American mink (<span style="font-style: italic;">Neovison vison</span>).
+ <span style="font-style: italic;">Molecular Ecology</span> <span
style="font-weight: bold;">18</span>: 1175-1186.<br>
<br>
[5] Cohas E, Bonenfant C, Kempaners B, Allainé D (2009).
- Age-specific effect of
- heterozygosity on survival in alpine marmots, <span class="i"><span
- style="font-style: italic;">Marmota marmota</span>.</span><span
- style="font-style: italic;">Molecular Ecology</span> <span
- style="font-weight: bold;">18</span>: 1491-1503.<br>
+ Age-specific effect of heterozygosity on survival in alpine
+ marmots, <span class="i"><span style="font-style: italic;">Marmota
+ marmota</span>.</span><span style="font-style: italic;">Molecular
+ Ecology</span> <span style="font-weight: bold;">18</span>:
+ 1491-1503.<br>
<br>
[6] O'Brien J, Devillard S, Say L, Vanthomme A, Léger F,
- Ruette S, Pontier D
- (2009). Preserving genetic integrity in a hybridising world:<br>
+ Ruette S, Pontier D (2009). Preserving genetic integrity in a
+ hybridising world:<br>
are European Wildcats (<span style="font-style: italic;">Felis
- silvestris
- silvestris</span>) in eastern France distinct from sympatric
- feral domestic
- cats? <span style="font-style: italic;">Biodivers Conserv</span>
- <span style="font-weight: bold;">18</span>: 2351-2360.<br>
+ silvestris silvestris</span>) in eastern France distinct from
+ sympatric feral domestic cats? <span style="font-style:
+ italic;">Biodivers Conserv</span> <span style="font-weight:
+ bold;">18</span>: 2351-2360.<br>
<br>
[7] Kanthaswamy S <span style="font-style: italic;">et al.</span>
- (2009).
- Canine Population Data Generated from a Multiplex STR Kit for
- Use in Forensic
- Casework. <span style="font-style: italic;">Journal of Forensic
- Sciences</span>
- <span style="font-weight: bold;">54</span>: 829-840.<br>
+ (2009). Canine Population Data Generated from a Multiplex STR
+ Kit for Use in Forensic Casework. <span style="font-style:
+ italic;">Journal of Forensic Sciences</span> <span
+ style="font-weight: bold;">54</span>: 829-840.<br>
<br>
[8] Lankau R A, Nuzzo V, Spyreas G, Davis A S (2009).
- Evolutionary limits
- ameliorate the negative impact of an invasive plant. <span
- style="font-style: italic;">Proceedings of the National
- Academy of
- Sciences</span> <span style="font-weight: bold;">106</span>:
- 15362-15367.<br>
+ Evolutionary limits ameliorate the negative impact of an
+ invasive plant. <span style="font-style: italic;">Proceedings
+ of the National Academy of Sciences</span> <span
+ style="font-weight: bold;">106</span>: 15362-15367.<br>
<br>
[9] Dutech C, Fabreguettes O, Capdevielle X, Robin C (2009)
- Multiple
- introductions of divergent genetic lineages in an invasive
- fungal pathogen,
- Cryphonectria parasitica, in France. <span style="font-style:
- italic;">Heredity</span> (advanced online) doi:
- 10.1038/hdy.2009.164.<br>
+ Multiple introductions of divergent genetic lineages in an
+ invasive fungal pathogen, Cryphonectria parasitica, in France. <span
+ style="font-style: italic;">Heredity</span> (advanced online)
+ doi: 10.1038/hdy.2009.164.<br>
<br>
[10] L Y Rutledge, C J Garroway, K M Loveless and
- B R Patterson (2010) Genetic
- differentiation of eastern wolves in Algonquin Park despite
- bridging gene flow
- between coyotes and grey wolves.<span style="font-style:
- italic;">Heredity</span> (advanced online) doi:
- 10.1038/hdy.2010.6.<br>
+ B R Patterson (2010) Genetic differentiation of eastern
+ wolves in Algonquin Park despite bridging gene flow between
+ coyotes and grey wolves.<span style="font-style: italic;">Heredity</span>
+ (advanced online) doi: 10.1038/hdy.2010.6.<br>
<br>
[11] Jennifer Paul, Nicole Vachon,
Colin J. Garroway and Joanna R. Freeland
(2010) Molecular data provide strong evidence of natural
- hybridization between
- native and introduced lineages of <i>Phragmites australis</i>
- in North America.
- <span style="font-style: italic;">Biological Invasions</span>.
- doi:
+ hybridization between native and introduced lineages of <i>Phragmites
+ australis</i> in North America. <span style="font-style:
+ italic;">Biological Invasions</span>. doi:
10.1007/s10530-010-9699-6.<br>
<br>
[12] C. BERTHOULY, D. DO NGOC, S. THÉVENON, D. BOUCHEL,
- T. NHU VAN, C. DANES,
- V. GROSBOIS, H. HOANG THANH, C. VU CHI, J.-C. MAILLARD (2009)
- How does farmer
- connectivity influence livestock genetic structure? A case-study
- in a
- Vietnamese goat population. <span style="font-style: italic;">Molecular
- Ecology</span> <span style="font-weight: bold;">18</span>:
- 3980-3991<br>
+ T. NHU VAN, C. DANES, V. GROSBOIS, H. HOANG THANH, C. VU CHI,
+ J.-C. MAILLARD (2009) How does farmer connectivity influence
+ livestock genetic structure? A case-study in a Vietnamese goat
+ population. <span style="font-style: italic;">Molecular Ecology</span>
+ <span style="font-weight: bold;">18</span>: 3980-3991<br>
<br>
[13] <span class="name"><span class="forenames">COLIN J.</span>
<span class="surname">GARROWAY</span><sup><nobr></nobr></sup></span>,
@@ -255,52 +227,45 @@
<span class="name"><span class="forenames">GREGORY</span> <span
class="surname">TURNER</span></span> and <span class="name"><span
class="forenames">PAUL J.</span> <span class="surname">WILSON</span>
- (2009)
- </span>Climate change induced hybridization in flying squirrels.
- <span style="font-style: italic;">Global Change Biology</span> <span
- style="font-weight: bold;">16</span>: 113-121.<br>
+ (2009) </span>Climate change induced hybridization in flying
+ squirrels. <span style="font-style: italic;">Global Change
+ Biology</span> <span style="font-weight: bold;">16</span>:
+ 113-121.<br>
<br>
[14] <span class="name"><span class="forenames">JOSSELIN</span>
<span class="surname">MONTARRY</span></span>, <span
class="name"><span class="forenames">DIDIER</span> <span
- class="surname">ANDRIVON</span>,</span>
- <span class="name"><span class="forenames">ISABELLE</span> <span
- class="surname">GLAIS</span></span>, <span class="name"><span
- class="forenames">ROSELYNE</span> <span class="surname">CORBIERE</span></span>,
- <span class="name"><span class="forenames">GLADYS</span> <span
- class="surname">MIALDEA</span></span> and <span
- class="name"><span class="forenames">FRANCOIS</span> <span
- class="surname">DELMOTTE
- (2010)</span></span> Microsatellite markers reveal two
- admixed genetic groups
- and an ongoing displacement within the French population of the
- invasive plant
- pathogen <span class="i"><span style="font-style: italic;">Phytophthora
- infestans</span>. <span style="font-style: italic;">Molecular
- Ecology</span>
- <span style="font-weight: bold;">19</span>: <span
+ class="surname">ANDRIVON</span>,</span> <span class="name"><span
+ class="forenames">ISABELLE</span> <span class="surname">GLAIS</span></span>,
+ <span class="name"><span class="forenames">ROSELYNE</span> <span
+ class="surname">CORBIERE</span></span>, <span class="name"><span
+ class="forenames">GLADYS</span> <span class="surname">MIALDEA</span></span>
+ and <span class="name"><span class="forenames">FRANCOIS</span>
+ <span class="surname">DELMOTTE (2010)</span></span>
+ Microsatellite markers reveal two admixed genetic groups and an
+ ongoing displacement within the French population of the
+ invasive plant pathogen <span class="i"><span
+ style="font-style: italic;">Phytophthora infestans</span>. <span
+ style="font-style: italic;">Molecular Ecology</span> <span
+ style="font-weight: bold;">19</span>: <span
style="text-decoration: underline;"></span></span>1965-1977<br>
<br>
[15] Gwenaelle Comont, Marie-France Corio-Costet,
- Philippe Larignon and
- François Delmotte (2010) AFLP markers reveal two
- genetic groups in the French
- population of the grapevine fungal pathogen <i>Phaeomoniella
- chlamydospora.
- European Journal of Plant Pathology</i> Doi:
+ Philippe Larignon and François Delmotte (2010)
+ AFLP markers reveal two genetic groups in the French population
+ of the grapevine fungal pathogen <i>Phaeomoniella
+ chlamydospora. European Journal of Plant Pathology</i> Doi:
10.1007/s10658-010-9611-3<br>
<br>
[16] <span class="name"><span class="forenames">Michelle F.</span>
<span class="surname">DiLeo</span></span>, <span class="name"><span
class="forenames">Jeffrey R.</span> <span class="surname">Row</span></span>
- and
- <span class="name"><span class="forenames">Stephen C.</span> <span
- class="surname">Lougheed (2010)</span></span> Discordant
- patterns of population
- structure for two co-distributed snake species across a
- fragmented Ontario
- landscape. <span style="font-style: italic;">Diversity and
- Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+ and <span class="name"><span class="forenames">Stephen C.</span>
+ <span class="surname">Lougheed (2010)</span></span> Discordant
+ patterns of population structure for two co-distributed snake
+ species across a fragmented Ontario landscape. <span
+ style="font-style: italic;">Diversity and Distributions.</span>
+ Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
<br>
[17] </span><span class="name"><span class="forenames">Francisco</span>
<span class="surname">Balao</span><sup><nobr></nobr></sup></span>,
@@ -312,28 +277,23 @@
class="surname">Herrera</span><sup><nobr></nobr></sup> </span>
and <span class="name"><span class="forenames">Salvador</span>
<span class="surname">Talavera</span> (2010)</span> Radiative
- evolution of polyploid
- races of the Iberian carnation <span class="i">Dianthus broteri</span>
- (Caryophyllaceae).<span class="name"><sup style="font-style:
- italic;"><nobr></nobr></sup></span><span class="doi"><span
- style="font-style: italic;">New Phytologist. </span>Doi:</span><span
- class="doi">10.1111/j.1469-8137.2010.03280.x<br>
+ evolution of polyploid races of the Iberian carnation <span
+ class="i">Dianthus broteri</span> (Caryophyllaceae).<span
+ class="name"><sup style="font-style: italic;"><nobr></nobr></sup></span><span
+ class="doi"><span style="font-style: italic;">New Phytologist.
+ </span>Doi:</span><span class="doi">10.1111/j.1469-8137.2010.03280.x<br>
<br>
[18] </span>Gadieux P, Caffier V , Devaux M , Le Cam B(2010)
- Host-specific
- differentiation among populations of Venturia inaegualis causing
- scab on apple,
- pyracantha and loquat. <span style="font-style: italic;">FUNGAL
- GENETICS AND
- BIOLOGY</span> , 47: 511-521<br>
+ Host-specific differentiation among populations of Venturia
+ inaegualis causing scab on apple, pyracantha and loquat. <span
+ style="font-style: italic;">FUNGAL GENETICS AND BIOLOGY</span>
+ , 47: 511-521<br>
<span style="display: block;" id="records_chunks"><br>
[19] Joost S, Colli L, Baret PV, et al. (2010) Integrating
- geo-referenced
- multiscale and multidisciplinary data for the management of
- biodiversity in
- livestock genetic resources. <span style="font-style:
- italic;">Animal Genetics
- </span><span style="font-weight: bold;">41</span>: 47-63.<br>
+ geo-referenced multiscale and multidisciplinary data for the
+ management of biodiversity in livestock genetic resources. <span
+ style="font-style: italic;">Animal Genetics </span><span
+ style="font-weight: bold;">41</span>: 47-63.<br>
</span><span class="authors"><span style="white-space:
nowrap;">[20] Denis Laloë</span>, <span
style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>,
@@ -355,21 +315,17 @@
style="white-space: nowrap;">Alessio Valentini</span>, <span
style="white-space: nowrap;">Pamela Wiener</span> and <span
style="white-space: nowrap;">European Cattle Genetic
- Diversity Consortium and
- Econogene Consortium</span></span> (2010) <span
- class="title">Spatial Trends of
- Genetic Variation of Domestic Ruminants in Europe</span>. <span
- class="idnt"><em>Diversity</em> <b>2010</b>, <em>2</em>(6),
- 932-945;
- doi:10.3390/d2060932</span><br>
+ Diversity Consortium and Econogene Consortium</span></span>
+ (2010) <span class="title">Spatial Trends of Genetic Variation
+ of Domestic Ruminants in Europe</span>. <span class="idnt"><em>Diversity</em>
+ <b>2010</b>, <em>2</em>(6), 932-945; doi:10.3390/d2060932</span><br>
<span style="display: block;" id="records_chunks"><br>
</span><span class="citation_author">[21] Gautier M, </span> <span
class="citation_author">Laloë D, </span> <span
class="citation_author">Moazami-Goudarzi K, </span> <span
class="citation_date">2010</span> <span
- class="citation_article_title">Insights
- into the Genetic History of French Cattle from Dense SNP Data
- on 47 Worldwide
+ class="citation_article_title">Insights into the Genetic
+ History of French Cattle from Dense SNP Data on 47 Worldwide
Breeds. </span> <span style="font-style: italic;"
class="citation_journal_title">PLoS ONE</span><span
class="citation_issue"><span style="font-weight: bold;">5(9)</span>:</span>
@@ -378,1046 +334,793 @@
class="citation_author">a<br>
<br>
</span>[22] Morris, C. E., D. C. Sands, J. L. Vanneste, J.
- Montarry, B. Oakley,
- et al. 2010. Inferring the evolutionary history of the plant
- pathogen
- <em>Pseudomonas syringae</em> from its biogeography in
- headwaters of rivers in
- North America, Europe, and New Zealand. <span
- style="font-style: italic;">mBio
+ Montarry, B. Oakley, et al. 2010. Inferring the evolutionary
+ history of the plant pathogen <em>Pseudomonas syringae</em>
+ from its biogeography in headwaters of rivers in North America,
+ Europe, and New Zealand. <span style="font-style: italic;">mBio
</span>1(3):e00107-10. doi:10.1128/mBio.00107-10. <br>
<p class="auth_list"><a title="Biology letters.">[23] </a>Bower
- MA, Campana MG,
- Whitten M, Edwards CJ, Jones H, Barrett E, Cassidy R, Nisbet
- RE, Hill EW, Howe
- CJ, Binns M (2010) The cosmopolitan maternal heritage of the
- Thoroughbred
- racehorse breed shows a significant contribution from British
- and Irish native
- mares. <a style="font-style: italic;" title="Biology
- letters.">Biol
- Lett.</a><span style="font-style: italic;"></span>2010 Oct
- 6. [Epub ahead of
- print]<br>
+ MA, Campana MG, Whitten M, Edwards CJ, Jones H, Barrett E,
+ Cassidy R, Nisbet RE, Hill EW, Howe CJ, Binns M (2010) The
+ cosmopolitan maternal heritage of the Thoroughbred racehorse
+ breed shows a significant contribution from British and Irish
+ native mares. <a style="font-style: italic;" title="Biology
+ letters.">Biol Lett.</a><span style="font-style: italic;"></span>2010
+ Oct 6. [Epub ahead of print]<br>
</p>
<p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
- ROSSI, J.-P.,
- BRANCO, M. and KERDELHUÉ, C. , Incipient allochronic
- speciation in the pine
- processionary moth (<em>Thaumetopoea pityocampa</em>,
- Lepidoptera,
- Notodontidae). <span style="font-style: italic;">Journal of
- Evolutionary
- Biology</span>, no.
- doi: 10.1111/j.1420-9101.2010.02147.x<br>
+ ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
+ allochronic speciation in the pine processionary moth (<em>Thaumetopoea
+ pityocampa</em>, Lepidoptera, Notodontidae). <span
+ style="font-style: italic;">Journal of Evolutionary Biology</span>,
+ no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
</p>
<p class="auth_list">[25] Giorgia Ferrara, Rita Cannas, Marco
- Stagioni, Giulia
- Riccioni, Piero Addis, Angelo Cau, Corrado Piccinetti,
- FaustoTinti (2010)
- Fishery genetics of mediterranean bluefin tuna: review of
- existing data,
- on-going studies and perspectives. <span style="font-style:
- italic;">Collect.
+ Stagioni, Giulia Riccioni, Piero Addis, Angelo Cau, Corrado
+ Piccinetti, FaustoTinti (2010) Fishery genetics of
+ mediterranean bluefin tuna: review of existing data, on-going
+ studies and perspectives. <span style="font-style: italic;">Collect.
+
Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
<p class="intro">[26] <span class="citation_author">Vandewoestijne
- S, </span>
- <span class="citation_author">Van Dyck H, </span> <span
- class="citation_date">2010</span> <span
+
+ S, </span> <span class="citation_author">Van Dyck H, </span>
+ <span class="citation_date">2010</span> <span
class="citation_article_title">Population Genetic
- Differences along a
- Latitudinal Cline between Original and Recently Colonized
- Habitat in a
- Butterfly. </span> <span style="font-style: italic;"
- class="citation_journal_title">PLoS ONE</span><span
- class="citation_issue">5(11):</span> <span
+ Differences along a Latitudinal Cline between Original and
+ Recently Colonized Habitat in a Butterfly. </span> <span
+ style="font-style: italic;" class="citation_journal_title">PLoS
+ ONE</span><span class="citation_issue">5(11):</span> <span
class="citation_start_page">e13810.</span> <span
class="citation_doi">doi:10.1371/journal.pone.0013810<br>
</span></p>
<p class="intro">[27] Lagisz, M., Port, G. and Wolff, K. (2011)
- Living in a
- jar: genetic variation and differentiation among laboratory
- strains of the red
- flour beetle. <span style="font-style: italic;">Journal of
- Applied
- Entomology</span>, no.
- doi: 10.1111/j.1439-0418.2010.01593.x<br>
+ Living in a jar: genetic variation and differentiation among
+ laboratory strains of the red flour beetle. <span
+ style="font-style: italic;">Journal of Applied Entomology</span>,
+ no. doi: 10.1111/j.1439-0418.2010.01593.x<br>
</p>
<p class="authors">[28] Jessica A. Satkoski Trask, Ripan S.
- Malhi, Sree
- Kanthaswamy, Jesse Johnson, Wendy T. Garnica, Venkat S.
- Malladi and David Glenn
- Smith.(2011) The effect of SNP discovery method and sample
- size on estimation
- of population genetic data for Chinese and Indian rhesus
- macaques (<i>Macaca
- mulatta</i>). <span style="font-style: italic;">Primates:
+ Malhi, Sree Kanthaswamy, Jesse Johnson, Wendy T. Garnica,
+ Venkat S. Malladi and David Glenn Smith.(2011) The effect of
+ SNP discovery method and sample size on estimation of
+ population genetic data for Chinese and Indian rhesus macaques
+ (<i>Macaca mulatta</i>). <span style="font-style: italic;">Primates:
+
</span><span class="doi"><span class="label">DOI:</span> <span
class="value">10.1007/s10329-010-0232-4<br>
</span></span></p>
<p class="auth_list">[29] HELYAR, S. J., HEMMER-HANSEN, J.,
- BEKKEVOLD, D.,
- TAYLOR, M. I., OGDEN, R., LIMBORG, M. T., CARIANI, A., MAES,
- G. E., DIOPERE,
- E., CARVALHO, G. R. and NIELSEN, E. E. , Application of SNPs
- for population
- genetics of nonmodel organisms: new opportunities and
- challenges. <span style="font-style: italic;">Molecular
- Ecology Resources</span>, no.
[TRUNCATED]
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