From noreply at r-forge.r-project.org  Fri Aug  9 14:27:14 2013
From: noreply at r-forge.r-project.org (noreply at r-forge.r-project.org)
Date: Fri,  9 Aug 2013 14:27:14 +0200 (CEST)
Subject: [adegenet-commits] r1153 - www
Message-ID: <20130809122714.DFE19185177@r-forge.r-project.org>

Author: jombart
Date: 2013-08-09 14:27:14 +0200 (Fri, 09 Aug 2013)
New Revision: 1153

Modified:
   www/documentation.html
Log:
Now pointing to links on CRAN for doc

Modified: www/documentation.html
===================================================================
--- www/documentation.html	2013-07-09 13:08:05 UTC (rev 1152)
+++ www/documentation.html	2013-08-09 12:27:14 UTC (rev 1153)
@@ -44,39 +44,44 @@
 
 
 
+
         engine</a>. <br>
       <br>
       <br>
       <br>
       <span style="font-weight: bold; color: rgb(0, 102, 0);">Manuals</span><br>
       - the adegenet <span style="font-weight: bold;">manual</span> (<a
-        href="files/adegenet-manual.pdf">pdf</a>), which compiles all
-      the manpages of the package.<br>
+href="http://cran.r-project.org/web/packages/adegenet/adegenet.pdf">pdf</a>),
+      which compiles all the manpages of the package.<br>
       <br>
       <br>
       <span style="color: rgb(0, 102, 0); font-weight: bold;">Tutorials
         vignettes </span><br>
-      - <a href="files/adegenet-basics.pdf"><span style="font-style:
-          italic;">adegenet-basics</span></a>: introduction to the
-      package; accessible from R by typing <span style="font-family:
-        monospace; color: rgb(255, 0, 0);">vignette("adegenet-basics")</span>.<br>
-      - <a href="files/adegenet-spca.pdf"><span style="font-style:
-          italic;">adegenet-spca</span></a>: spatial multivariate
-      analysis using adegenet; includes an introduction to spatial PCA
-      (sPCA); accessible from R by typing <span style="font-family:
-        monospace; color: rgb(255, 0, 0);">vignette("adegenet-spca")</span>.<br>
+      - <a
+href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-basics.pdf"><span
+          style="font-style: italic;">adegenet-basics</span></a>:
+      introduction to the package; accessible from R by typing <span
+        style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-basics")</span>.<br>
+      - <a
+href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-spca.pdf"><span
+          style="font-style: italic;">adegenet-spca</span></a>: spatial
+      multivariate analysis using adegenet; includes an introduction to
+      spatial PCA (sPCA); accessible from R by typing <span
+        style="font-family: monospace; color: rgb(255, 0, 0);">vignette("adegenet-spca")</span>.<br>
     </div>
-    <div style="margin-left: 40px;">- <a href="files/adegenet-dapc.pdf"><span
+    <div style="margin-left: 40px;">- <a
+href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-dapc.pdf"><span
           style="font-style: italic;">adegenet-dapc</span></a>: analysis
       of the genetic structuring of populations; includes an
       introduction to Discriminant Analysis of Principal Components
       (DAPC); accessible from R by typing <span style="font-family:
         monospace; color: rgb(255, 0, 0);">vignette("adegenet-dapc")</span>.<br>
-      - <a href="files/adegenet-genomics.pdf"><span style="font-style:
-          italic;">adegenet-genomics</span></a>: introduction to the
-      handling of genome-wide SNP data using adegenet; accessible from R
-      by typing <span style="font-family: monospace; color: rgb(255, 0,
-        0);">vignette("adegenet-genomics")</span>.<br>
+      - <a
+href="http://cran.r-project.org/web/packages/adegenet/vignettes/adegenet-genomics.pdf"><span
+          style="font-style: italic;">adegenet-genomics</span></a>:
+      introduction to the handling of genome-wide SNP data using
+      adegenet; accessible from R by typing <span style="font-family:
+        monospace; color: rgb(255, 0, 0);">vignette("adegenet-genomics")</span>.<br>
       <br>
       &nbsp;&nbsp;&nbsp;&nbsp; <br>
       <span style="font-weight: bold; color: rgb(0, 102, 0);">Lectures
@@ -107,6 +112,7 @@
 
 
 
+
         1</a> [<a href="files/practical-day1.1.2-allcmd.pdf">version
         with all commands</a>]<br>
       &nbsp;&nbsp;&nbsp; &gt; <a href="files/practical-day2.1.3.pdf">practical
@@ -120,6 +126,7 @@
 
 
 
+
         2</a> [<a href="files/practical-day2.1.3-allcmd.pdf">version
         with all commands</a>]<br>
       &nbsp;&nbsp;&nbsp; &gt; <a href="files/practical-day3.1.2.pdf">practical
@@ -133,6 +140,7 @@
 
 
 
+
         3</a><br>
       <br>
       - MRC methodological session: Introduction to phylogenetics:<br>
@@ -161,6 +169,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to phylogenetics</span>.<img
         style=" width: 80px; height: 37px;" alt="new"
@@ -179,6 +188,7 @@
 
 
 
+
         Epidemiology</span> / <i>Public Health</i>: <span
         style="font-weight: bold;">Introduction to multivariate analysis
         / bacterial GWAS</span>.<img style=" width: 80px; height: 37px;"
@@ -195,6 +205,7 @@
           style="font-style: italic;">ape, adegenet,</span> </span><b>and
 
 
+
       </b><b><i>outbreaker</i></b> <img style=" width: 80px; height:
         37px;" alt="new" src="images/new.png" height="37" width="80"><br>
       &nbsp;&nbsp;&nbsp; &gt; <a href="files/GenEpiTalk.1.0.pdf">talk</a><br>
@@ -216,6 +227,7 @@
 
 
 
+
       <a href="files/hackLib/README">README</a> <img style=" width:
         80px; height: 37px;" alt="new" src="images/new.png" height="37"
         width="80"><br>