[adegenet-commits] r1032 - www

noreply at r-forge.r-project.org noreply at r-forge.r-project.org
Wed Sep 19 13:54:27 CEST 2012


Author: jombart
Date: 2012-09-19 13:54:27 +0200 (Wed, 19 Sep 2012)
New Revision: 1032

Modified:
   www/literature.html
Log:
+1ref


Modified: www/literature.html
===================================================================
--- www/literature.html	2012-08-14 11:07:31 UTC (rev 1031)
+++ www/literature.html	2012-09-19 11:54:27 UTC (rev 1032)
@@ -32,6 +32,7 @@
         0);">2008)</span><span style="font-weight: bold; color: rgb(0,
         153, 0);"> </span><span style="color: rgb(0, 153, 0);">adegenet:
 
+
         a R package for the multivariate analysis of genetic markers. </span><span
         style="font-style: italic; color: rgb(0, 153, 0);">Bioinformatics</span><span
         style="color: rgb(0, 153, 0);"> </span><span
@@ -54,9 +55,9 @@
 
 to
 
+
         the bublisher's website</a><span style="color: rgb(0, 153, 0);">]</span>
-      <img style="width: 80px; height: 37px;" alt=""
-        src="images/new.png"><br style="color: rgb(0, 153, 0);">
+      <br style="color: rgb(0, 153, 0);">
       <br>
       <br style="color: rgb(0, 153, 0);">
       <br>
@@ -74,11 +75,13 @@
       to the journal's pdf - <a target="_new"
 href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy2008130a.html">free
 
+
         abstract</a>]<br>
       <br>
       - the paper presenting the <span style="font-style: italic;">spatial
 principal
 
+
         component analysis</span> (<span style="font-style: italic;">sPCA</span>,
       function <span style="font-family: monospace; color: rgb(255, 0,
         0);">spca</span>), global and local tests (<span
@@ -93,6 +96,7 @@
       on the journal's website - <a target="_new"
 href="http://www.nature.com/hdy/journal/vaop/ncurrent/abs/hdy200834a.html">free
 
+
         abstract</a>]<br>
     </div>
     <br>
@@ -114,6 +118,7 @@
 
 of
 
+
       haplotypes (<span style="font-family: monospace; color: rgb(255,
         0, 0);">haploGen</span>):<br>
       <b>Jombart T, </b>Eggo RM, Dodd PJ, Balloux F (2010)
@@ -125,6 +130,7 @@
 
 Analysis
 
+
         of Principal Components</span> (<span style="font-style:
         italic;">DAPC</span>, functions <span style="font-family:
         monospace;"><span style="color: rgb(255, 0, 0);">find.clusters</span>
@@ -135,9 +141,9 @@
       the analysis of genetically structured populations. <i>BMC
         Genetics</i> <strong>11</strong><strong>:</strong>94. <span>doi:10.1186/1471-2156-11-94</span>
       [<a href="files/DAPCpaper.pdf">free pdf</a>] [<a
-        href="http://www.biomedcentral.com/1471-2156/11/94">free
-        html version</a>] [<a href="reviewDAPC.html">evaluation by
-        Laurent Excoffier on F1000</a>] <br>
+        href="http://www.biomedcentral.com/1471-2156/11/94">free html
+        version</a>] [<a href="reviewDAPC.html">evaluation by Laurent
+        Excoffier on F1000</a>] <br>
       <br>
       <br>
       <br>
@@ -156,6 +162,7 @@
       identification in the rhesus macaque (<em>Macaca mulatta</em>). <span
         class="citation-abbreviation"><span style="font-style: italic;">BMC
 
+
           Genomics</span></span><span class="citation-publication-date">
       </span><span style="font-weight: bold;" class="citation-volume">9</span><span
         class="citation-issue"></span>: 256.<br>
@@ -173,6 +180,7 @@
         AI (2009). Hybridization between escaped domestic and wild
         American mink (<span style="font-style: italic;">Neovison vison</span>).
 
+
         <span style="font-style: italic;">Molecular Ecology</span> <span
           style="font-weight: bold;">18</span>: 1175-1186.<br>
         <br>
@@ -180,6 +188,7 @@
         Age-specific effect of heterozygosity on survival in alpine
         marmots, <span class="i"><span style="font-style: italic;">Marmota
 
+
             marmota</span>.</span><span style="font-style: italic;">
           Molecular Ecology</span> <span style="font-weight: bold;">18</span>:
         1491-1503.<br>
@@ -221,6 +230,7 @@
         Colin J. Garroway and Joanna R. Freeland
         (2010) Molecular data provide strong evidence of natural
         hybridization between native and introduced lineages of <i>Phragmites
+
           australis</i> in North America. <span style="font-style:
           italic;">Biological Invasions</span>. doi:
         10.1007/s10530-010-9699-6.<br>
@@ -283,8 +293,8 @@
           <span class="surname">Lougheed (2010)</span></span> Discordant
         patterns of population structure for two co-distributed snake
         species across a fragmented Ontario landscape. <span
-          style="font-style: italic;">Diversity
-          and Distributions.</span> Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
+          style="font-style: italic;">Diversity and Distributions.</span>
+        Doi: <span class="doi">10.1111/j.1472-4642.2010.00667.x<br>
           <br>
           [17] </span><span class="name"><span class="forenames">Francisco</span>
           <span class="surname">Balao</span><sup><nobr></nobr></sup></span>,
@@ -317,23 +327,19 @@
            </span><span class="authors"><span style="white-space:
             nowrap;">[20] Denis Laloë</span>, <span
             style="white-space: nowrap;">Katayoun Moazami-Goudarzi</span>,
-          <span style="white-space: nowrap;">Johannes
-            A. Lenstra</span>, <span style="white-space: nowrap;">Paolo
-            Ajmone Marsan</span>, <span style="white-space: nowrap;">Pedro
-
-            Azor</span>, <span style="white-space: nowrap;">Roswitha
-            Baumung</span>, <span style="white-space: nowrap;">Daniel
-            G. Bradley</span>, <span style="white-space: nowrap;">Michael
-
-            W. Bruford</span>, <span style="white-space: nowrap;">Javier
-
-            Cañón</span>, <span style="white-space:
-            nowrap;">Gaudenz Dolf</span>, <span style="white-space:
-            nowrap;">Susana Dunner</span>, <span style="white-space:
-            nowrap;">Georg Erhardt</span>, <span style="white-space:
-            nowrap;">Godfrey Hewitt</span>, <span style="white-space:
-            nowrap;">Juha Kantanen</span>, <span style="white-space:
-            nowrap;">Gabriela Obexer-Ruff</span>, <span
+          <span style="white-space: nowrap;">Johannes A. Lenstra</span>,
+          <span style="white-space: nowrap;">Paolo Ajmone Marsan</span>,
+          <span style="white-space: nowrap;">Pedro Azor</span>, <span
+            style="white-space: nowrap;">Roswitha Baumung</span>, <span
+            style="white-space: nowrap;">Daniel G. Bradley</span>, <span
+            style="white-space: nowrap;">Michael W. Bruford</span>, <span
+            style="white-space: nowrap;">Javier Cañón</span>,
+          <span style="white-space: nowrap;">Gaudenz Dolf</span>, <span
+            style="white-space: nowrap;">Susana Dunner</span>, <span
+            style="white-space: nowrap;">Georg Erhardt</span>, <span
+            style="white-space: nowrap;">Godfrey Hewitt</span>, <span
+            style="white-space: nowrap;">Juha Kantanen</span>, <span
+            style="white-space: nowrap;">Gabriela Obexer-Ruff</span>, <span
             style="white-space: nowrap;">Ingrid Olsaker</span>, <span
             style="white-space: nowrap;">Clemen Rodellar</span>, <span
             style="white-space: nowrap;">Alessio Valentini</span>, <span
@@ -370,25 +376,28 @@
           breed shows a significant contribution from British and Irish
           native mares. <a style="font-style: italic;" title="Biology
             letters.">Biol Lett.</a><span style="font-style: italic;"> </span>2010
+
           Oct 6. [Epub ahead of print]<br>
         </p>
         <p class="auth_list">[24] SANTOS, H., BURBAN, C., ROUSSELET, J.,
           ROSSI, J.-P., BRANCO, M. and KERDELHUÉ, C. , Incipient
           allochronic speciation in the pine processionary moth (<em>Thaumetopoea
 
+
             pityocampa</em>, Lepidoptera, Notodontidae). <span
-            style="font-style: italic;">Journal
-            of Evolutionary Biology</span>, no.
-          doi: 10.1111/j.1420-9101.2010.02147.x<br>
+            style="font-style: italic;">Journal of Evolutionary Biology</span>,
+          no. doi: 10.1111/j.1420-9101.2010.02147.x<br>
         </p>
         <p class="auth_list">[25] Giorgia Ferrara, Rita Cannas, Marco
           Stagioni, Giulia Riccioni, Piero Addis, Angelo Cau, Corrado
           Piccinetti, FaustoTinti (2010) Fishery genetics of
           mediterranean bluefin tuna: review of existing data, on-going
           studies and perspectives. <span style="font-style: italic;">Collect.
+
             Vol. Sci. Pap. ICCAT</span>, 65(3): 988-995</p>
         <p class="intro">[26] <span class="citation_author">Vandewoestijne
 
+
             S, </span> <span class="citation_author">Van Dyck H, </span>
           <span class="citation_date">2010</span> <span
             class="citation_article_title">Population Genetic
@@ -396,6 +405,7 @@
             Recently Colonized Habitat in a Butterfly. </span> <span
             style="font-style: italic;" class="citation_journal_title">PLoS
 
+
             ONE</span><span class="citation_issue"> 5(11):</span> <span
             class="citation_start_page">e13810.</span> <span
             class="citation_doi">doi:10.1371/journal.pone.0013810<br>
@@ -412,6 +422,7 @@
           SNP discovery method and sample size on estimation of
           population genetic data for Chinese and Indian rhesus macaques
           (<i>Macaca mulatta</i>). <span style="font-style: italic;">Primates: 
+
           </span><span class="doi"><span class="label">DOI:</span> <span
               class="value">10.1007/s10329-010-0232-4<br>
             </span></span></p>
@@ -466,6 +477,7 @@
           J., NEWMAN, S. J. and Van HERWERDEN, L. (2011), Limited
           ecological population connectivity suggests low demands on
           self-recruitment in a tropical inshore marine fish (<em>Eleutheronema
+
             tetradactylum</em>: Polynemidae). Molecular Ecology,
           20: no. doi: 10.1111/j.1365-294X.2011.05097.x<br>
         </p>
@@ -478,6 +490,7 @@
             class="citation_date">2011</span> <span
             class="citation_article_title">Low Diversity <i>Cryptococcus
 
+
               neoformans</i> Variety <i>grubii</i> Multilocus Sequence
             Types from Thailand Are Consistent with an Ancestral African
             Origin.</span> <span class="citation_journal_title">PLoS
@@ -496,6 +509,7 @@
             class="hit"> Devillard</span>, M.P. Demar, B. de Thoisy, H.
           Bonnabau, F. Collinet, R. Boukhari, D. Blanchet, S. Simon, B.
           Carme, M.-L. Dardé (<span style="font-style: italic;">in
+
             press</span>) Human impact on genetic diversity of <span
             style="font-style: italic;">Toxoplasma gondii</span>:
           Example of the anthropized environment from French Guiana. <br>
@@ -517,6 +531,7 @@
           Jindřich ; Plačková, Ivana ;Mráz, Patrik (2001)
           Allozyme Variation in Diploid, Polyploid and Mixed-Ploidy
           Populations of the <span style="font-style: italic;">Pilosella
+
             alpicola</span> Group (Asteraceae): Relation to Morphology,
           Origin of Polyploids and Breeding System . Folia Geobotanica:
           1-24. Doi: 10.1007/s12224-011-9102-0<br>
@@ -726,6 +741,7 @@
         genetic signal of current connectivity among populations.
         GENETICA - <span style="font-style: italic;">Online first. </span>DOI:
 
+
         10.1007/s10709-012-9640-2<br>
         <br>
         [76] Samantha Baldwin, Meeghan Pither-Joyce, Kathryn Wright,
@@ -948,6 +964,11 @@
           Molecular Ecology Resources. doi:
           10.1111/j.1755-0998.2012.03174.x<br>
         </p>
+        <p class="intro">[113] Di Gaetano C, Voglino F, Guarrera S,
+          Fiorito G, Rosa F, et al. (2012) An Overview of the Genetic
+          Structure within the Italian Population from Genome-Wide Data.
+          PLoS ONE 7(9): e43759. doi:10.1371/journal.pone.0043759<br>
+        </p>
         <p class="intro"><br>
         </p>
         <p class="intro">* adegenet not or wrongly cited, but actually



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