[Ade4-commits] r502 - tools/updateweb
noreply at r-forge.r-project.org
noreply at r-forge.r-project.org
Thu Jan 21 16:06:36 CET 2010
Author: sdray
Date: 2010-01-21 16:06:36 +0100 (Thu, 21 Jan 2010)
New Revision: 502
Removed:
tools/updateweb/changelog.php
Log:
this file is not useful (i.e. generated by the Perls script)
Deleted: tools/updateweb/changelog.php
===================================================================
--- tools/updateweb/changelog.php 2010-01-21 12:44:13 UTC (rev 501)
+++ tools/updateweb/changelog.php 2010-01-21 15:06:36 UTC (rev 502)
@@ -1,902 +0,0 @@
-<?php
-$titre = "Accueil ade4";
-require("fonctionsade4.php");
-ecrit_header($titre);
-ecrit_presentation("changelog.php","changelog.php");
-ecrit_bandeau("changelog.php","changelog.php");
-debut_page();
-?>
-
-<b><a href = "http://r-forge.r-project.org/projects/ade4/">R-Forge</a></b><small>
-
- <h1> release of ade4 1.4-14 </h1>
-
-
-
- <p><b> DESCRIPTION, man/area.plot.Rd, man/neig.Rd, man/oribatid.Rd: </b> Use
- the package 'deldir' instead of 'tripack' which has serious
- license issues. Correct the use of the class polylist which is
- not exported in the new version of maptools (0.7-27)
-
-
-
- <p><b> R/costatis.R: </b> changes to the costatis function to remove cat
- outputs in non-interactive mode (i.e., when scannf = FALSE)
-
-
-
- <p><b> R/s.match.class.R, man/s.match.class.Rd: </b> Add new function
- 's.match.class' to represent two systems of coordinates and a
- partitioning
-
-
-
- <p><b> R/betweencoinertia.R, R/withincoinertia.R, man/betweencoinertia.Rd,
- man/withincoinertia.Rd: </b> Add new functions
- 'betweencoinertia' and 'withincoinertia' for between- and
- within-coinertia analysis
-
-
-
- <p><b> R/costatis.R, R/statico.R, man/costatis.Rd, man/statico.Rd,
- man/wgcoia.Rd: </b> New functions to perform STATICO and CO-STATIS
-
-
-
- <p><b> R/kdisteuclid.R: </b> Use 'match.arg' to evaluate the value of the
- 'method' argument
-
-
-
- <h1> release of ade4 1.4-13 </h1>
-
-
-
- <p><b> data/meaudret.rda: </b> addition of the species names in the dataset
-
-
-
- <p><b> man/meau.Rd, man/meaudret.Rd: </b> information about the link between
- the two datasets meau and meaudret has been added
-
-
-
- <p><b> R/phylog.R, R/plot.phylog.R: </b> Correct bug in the use of basic
- regular expressions (argument 'extended' is deprecated R 2.11.0)
-
-
-
- <p><b> R/originality.R, man/originality.Rd: </b> new methods have been added
- in the originality function
-
-
-
- <p><b> data/woangers.rda, man/woangers.Rd, man/rhizobium.Rd, data/rhizobium.rda,
- data/macroloire.rda, man/macroloire.Rd: </b> three new data sets added
-
-
-
- <p><b> R/dist.ktab.R, man/dist.ktab.Rd: </b> new functions of distance for
- multiple types of variables
-
-
-
- <p><b> R/apqe.R, man/apqe.Rd: </b> new functions for diversity partitioning
-
-
-
- <p><b> R/mdpcoa.R, man/mdpcoa.Rd: </b> new functions for multiple dpcoa
-
-
-
- <p><b> ChangeLog: </b> release of ade4 1.4-12
-
-
-
- <h1> release of ade4 1.4-12 </h1>
-
-
-
- <p><b> data/toxicity.rda, man/toxicity.Rd: </b> Correct species names and
- table dimensions (thanks to Jean Lobry)
-
-
-
- <p><b> R/dudi.R: </b> bug on row.names in as.dudi (thanks to Jean Lobry)
-
-
-
- <p><b> R/newick2phylog.R: </b> Correct bug in the use of basic regular
- expressions
-
-
-
- <p><b> man/multispati.Rd, man/multispati.randtest.Rd,
- man/multispati.rtest.Rd: </b> update links to spdep functions in the
- documentation
-
-
-
- <p><b> R/newick2phylog.R, man/s.value.Rd, man/variance.phylog.Rd: </b> Minor
- bugs have been fixes. Replace extended = FALSE by fixed = TRUE
-
-
-
- <p><b> man/scatter.dudi.Rd: </b> added some precision about biplots in
- scatter.dudi.Rd
-
-
-
- <p><b> R/pta.R: </b> corrected a small bug in row names of supIX and supIY df
-
-
-
- <p><b> R/dist.binary.R, man/dist.binary.Rd: </b> Numeric matrix can be used
- for the 'df' argument (request of E. Paradis)
-
-
-
- <p><b> R/area.plot.R: </b> argument nclasslegend is now active. bug
- identified by C. Calenge
-
-
-
- <p><b> ChangeLog: </b> release of ade4 1.4-11
-
-
-
- <h1> release of ade4 1.4-11 </h1>
-
-
-
- <p><b> man/buech.Rd, man/corvus.Rd, man/dist.binary.Rd,
- man/dist.prop.Rd, man/dist.quant.Rd, man/kplot.mcoa.Rd,
- man/kplot.pta.Rd, man/ktab.Rd, man/maples.Rd, man/mcoa.Rd,
- man/mfa.Rd, man/njplot.Rd, man/orthogram.Rd, man/phylog.Rd,
- man/randtest.coinertia.Rd, man/scatter.fca.Rd,
- man/scatterutil.Rd, man/supcol.Rd, man/withinpca.Rd: </b> Make Rd
- files pass R-2.9.0 (devel) parser 2 checks
-
-
-
- <p><b> man/randEH.Rd: </b> replace PD in EH
-
-
-
- <p><b> man/optimEH.Rd: </b> replace PD in EH
-
-
-
- <p><b> ChangeLog: </b> release of ade4 1.4-10
-
-
-
- <h1> release of ade4 1.4-10 </h1>
-
-
-
- <p><b> R/combine.4thcorner.R, R/fourthcorner.R, R/fourthcorner2.R,
- R/plot.4thcorner.R, R/print.4thcorner.R, R/summary.4thcorner.R,
- man/fourthcorner.Rd, src/fourthcorner.c: </b> new functions
- implementing the fourthcorner method and extensions presented in
- Dray and Legendre (2008)
-
-
-
- <p><b> src/adesub.c, src/adesub.h, src/testdim.c: </b> new functions to
- permute matrices used in testdim and fourthcorner are now in
- adesub
-
-
-
- <p><b> man/RVdist.randtest.Rd, man/randtest-internal.Rd,
- man/scatterutil.Rd: </b> remove empty sections
-
-
-
- <p><b> man/dudi.fca.Rd: </b> add a second argument to the \item macro
-
-
-
- <p><b> man/witwit.coa.Rd: </b> remove invalid whitespaces
-
-
-
- <p><b> R/gearymoran.R: </b> small typo repared
-
-
-
- <p><b> R/gearymoran.R: </b> Added a match.arg to gearymoran (in multivariate
- case, was messed up.
-
-
-
- <p><b> R/niche.R: </b> Add a global test of the average marginality for all
- species
-
-
-
- <p><b> R/dudi.acm.R, R/dudi.coa.R, R/dudi.dec.R, R/dudi.fca.R,
- R/dudi.hillsmith.R, R/dudi.mix.R, R/dudi.nsc.R, R/dudi.pca.R: </b>
- Added a as.data.frame(df) to dudi methods.
-
-
-
- <p><b> data/abouheif.eg.rda: </b> new data files
-
-
-
- <p><b> data/acacia.rda, data/aminoacyl.rda, data/apis108.rda,
- data/ardeche.rda, data/arrival.rda, data/atlas.rda,
- data/atya.rda, data/avijons.rda, data/avimedi.rda,
- data/aviurba.rda, data/bacteria.rda, data/banque.rda,
- data/baran95.rda, data/bf88.rda, data/bordeaux.rda,
- data/bsetal97.rda, data/buech.rda, data/butterfly.rda,
- data/capitales.rda, data/carni19.rda, data/carni70.rda,
- data/carniherbi49.rda, data/casitas.rda, data/chatcat.rda,
- data/chats.rda, data/chazeb.rda, data/chevaine.rda,
- data/clementines.rda, data/cnc2003.rda, data/coleo.rda,
- data/corvus.rda, data/deug.rda, data/doubs.rda,
- data/dunedata.rda, data/ecg.rda, data/ecomor.rda,
- data/elec88.rda, data/escopage.rda, data/euro123.rda,
- data/fission.rda, data/friday87.rda, data/fruits.rda,
- data/ggtortoises.rda, data/granulo.rda, data/hdpg.rda,
- data/housetasks.rda, data/humDNAm.rda, data/ichtyo.rda,
- data/irishdata.rda, data/julliot.rda, data/jv73.rda,
- data/kcponds.rda, data/lascaux.rda, data/lizards.rda,
- data/macaca.rda, data/macon.rda, data/mafragh.rda,
- data/maples.rda, data/mariages.rda, data/meau.rda,
- data/meaudret.rda, data/microsatt.rda, data/mjrochet.rda,
- data/mollusc.rda, data/monde84.rda, data/morphosport.rda,
- data/newick.eg.rda, data/njplot.rda, data/olympic.rda,
- data/oribatid.rda, data/ours.rda, data/palm.rda, data/pap.rda,
- data/perthi02.rda, data/presid2002.rda, data/procella.rda,
- data/rankrock.rda, data/rhone.rda, data/rpjdl.rda,
- data/santacatalina.rda, data/sarcelles.rda, data/seconde.rda,
- data/skulls.rda, data/steppe.rda, data/syndicats.rda,
- data/t3012.rda, data/tarentaise.rda, data/taxo.eg.rda,
- data/tintoodiel.rda, data/tithonia.rda, data/tortues.rda,
- data/toxicity.rda, data/trichometeo.rda, data/ungulates.rda,
- data/vegtf.rda, data/veuvage.rda, data/westafrica.rda,
- data/worksurv.rda, data/yanomama.rda, data/zealand.rda: </b> new data
- files
-
-
-
- <p><b> data/abouheif.eg.rda, data/acacia.rda, data/aminoacyl.rda,
- data/apis108.rda, data/ardeche.rda, data/arrival.rda,
- data/atlas.rda, data/atya.rda, data/avijons.rda,
- data/avimedi.rda, data/aviurba.rda, data/bacteria.rda,
- data/banque.rda, data/baran95.rda, data/bf88.rda,
- data/bordeaux.rda, data/bsetal97.rda, data/buech.rda,
- data/butterfly.rda, data/capitales.rda, data/carni19.rda,
- data/carni70.rda, data/carniherbi49.rda, data/casitas.rda,
- data/chatcat.rda, data/chats.rda, data/chazeb.rda,
- data/chevaine.rda, data/clementines.rda, data/cnc2003.rda,
- data/coleo.rda, data/corvus.rda, data/deug.rda, data/doubs.rda,
- data/dunedata.rda, data/ecg.rda, data/ecomor.rda,
- data/elec88.rda, data/escopage.rda, data/euro123.rda,
- data/fission.rda, data/friday87.rda, data/fruits.rda,
- data/ggtortoises.rda, data/granulo.rda, data/hdpg.rda,
- data/housetasks.rda, data/humDNAm.rda, data/ichtyo.rda,
- data/irishdata.rda, data/julliot.rda, data/jv73.rda,
- data/kcponds.rda, data/lascaux.rda, data/lizards.rda,
- data/macaca.rda, data/macon.rda, data/mafragh.rda,
- data/maples.rda, data/mariages.rda, data/meau.rda,
- data/meaudret.rda, data/microsatt.rda, data/mjrochet.rda,
- data/mollusc.rda, data/monde84.rda, data/morphosport.rda,
- data/newick.eg.rda, data/njplot.rda, data/olympic.rda,
- data/oribatid.rda, data/ours.rda, data/palm.rda, data/pap.rda,
- data/perthi02.rda, data/presid2002.rda, data/procella.rda,
- data/rankrock.rda, data/rhone.rda, data/rpjdl.rda,
- data/santacatalina.rda, data/sarcelles.rda, data/seconde.rda,
- data/skulls.rda, data/steppe.rda, data/syndicats.rda,
- data/t3012.rda, data/tarentaise.rda, data/taxo.eg.rda,
- data/tintoodiel.rda, data/tithonia.rda, data/tortues.rda,
- data/toxicity.rda, data/trichometeo.rda, data/ungulates.rda,
- data/vegtf.rda, data/veuvage.rda, data/westafrica.rda,
- data/worksurv.rda, data/yanomama.rda, data/zealand.rda: </b> remove
- corrupted data files
-
-
-
- <p><b> ChangeLog, DESCRIPTION, INDEX, R, TITLE, data, inst, man, src: </b>
- move from trunk to pkg after initial import using cvs2svn
-
-
-
- <p><b> man: </b> remove man folder
-
-
-
- <p><b> R: </b> remove R folder
-
-
-
- <p><b> ChangeLog, DESCRIPTION, INDEX, R, TITLE, data, inst, man, src: </b>
- move from trunk to pkg after initial import using cvs2svn
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-9
-
-
-
-
- <p><b> R/niche.R: </b> Correct a syntax error
-
-
-
- <p><b> R/mantel.randtest.R, R/procuste.randtest.R: </b> Correct a bug. The
- number of repetitions was not correct ((nrepet + 1) instead of
- nrepet)
-
-
-
- <p><b> R/niche.R, R/randtest.between.R, R/randtest.coinertia.R,
- R/randtest.discrimin.R: </b> Correct a bug. The number of repetitions
- was not correct ((nrepet + 1) instead of nrepet)
-
-
-
- <p><b> R/krandtest.R, R/randtest.amova.R, man/krandtest.Rd: </b> the class
- krandtest now accepts a vector of alternative hypotheses instead
- of a common alternative hypothesis for the k tests (email of Kim
- Milferstedt on RHelp)
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-8
-
-
-
-
- <p><b> R/dudi.acm.R: bug correction (mail of JR Lobry on adelist): </b>
- (any(row.w) < 0) vs. (any(row.w < 0))
-
-
-
- <p><b> R/dudi.R: bug correction (mail of JR Lobry on adelist): </b>
- any(col.w) < 0 vs. any(col.w < 0)
-
-
-
- <p><b> data/ggtortoises.rda: </b> pixmap S3 objects transformed into S4 class
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-7
-
-
-
-
- <p><b> data/capitales.rda: </b> pixmap S3 objects transformed into S4 class
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-6
-
-
-
-
- <p><b> R/phylog.R: </b> Correct a bug in phylog.extract (mail of S. Ollier)
-
-
-
- <p><b> src/adesub.c, src/adesub.h, src/testrlq.c: </b> matcentragehi in now
- in adesub
-
-
-
- <p><b> R/nipals.R, man/nipals.Rd: </b> New function for NIPALS algorithm,
- i.e. PCA with (or without) NA
-
-
-
- <p><b> man/randtest.Rd: </b> add some words about the computation of pvalues
- for two-sided test
-
-
-
- <p><b> man/ade4.package.Rd: </b> empty log message
-
-
-
- <p><b> man/pcaiv.Rd: </b> empty log message
-
-
-
- <p><b> man/table.phylog.Rd: </b> Example table.phylog set to dontrun
-
-
-
- <p><b> man/multispati.Rd, man/vegtf.Rd: Update the source reference: </b>
- Dray et al. (2008)
-
-
-
- <p><b> man/dudi.pca.Rd: Modifications : </b> explanations about values (cent
- and norm) ; it{} into emph{}.
-
-
-
- <p><b> man/dudi.pca.Rd: </b> Modification of explanations ($cent and $norm)
-
-
-
- <p><b> R/sco.distri.R: correct a bug (identified by S. Pavoine): </b> default
- label argument was badly considered when one column contains only
- O's
-
-
-
- <p><b> R/scatter.R, R/scatterutil.R, man/scatter.Rd, man/scatterutil.Rd: </b>
- New utility function scatterutil.sco and scatterutil.convrot90
- for 1D graphical representation
-
-
-
- <p><b> R/sco.gauss.R, man/sco.gauss.Rd: </b> New function sco.gauss for 1D
- graphical representation
-
-
-
- <p><b> R/sco.match.R, man/sco.match.Rd: </b> New function sco.match for 1D
- graphical representation
-
-
-
- <p><b> R/sco.class.R, man/sco.class.Rd: </b> New function sco.class for 1D
- graphical representation
-
-
-
- <p><b> R/sco.label.R, man/sco.label.Rd: </b> New function sco.label for 1D
- graphical representation
-
-
-
- <p><b> R/sco.qual.R: </b> Functions of this file are now in sco.label.R and
- sco.gauss.R
-
-
-
- <p><b> inst/CITATION: </b> Add two new references to the CITATION file
-
-
-
- <p><b> R/randtest.cca.R, R/randtest.pcaiv.R, R/randtest.pcaivortho.R,
- man/randtest.pcaiv.Rd: </b> News functions for permutation tests in
- constrained analysis
-
-
-
- <p><b> src/testdim.c: </b> Correct a bug in memory allocation of the function
- svdd
-
-
-
- <p><b> man/sco.label.Rd: added function: </b> Draws evenly spaced labels,
- each label linked to the corresponding value of a numeric score
-
-
-
- <p><b> man/sco.gauss.Rd: added function: </b> Draws Gauss curves with the
- same mean and variance as the scores of indivivuals belonging to
- categories of several factors
-
-
-
- <p><b> man/veuvage.Rd: </b> Correstion of illegal accented character in
- exemple code
-
-
-
- <p><b> R/sco.qual.R: adds two functions: </b> sco.gauss and sco.label (draw
- Gauss curves on a score by categories of several factors)
-
-
-
- <p><b> R/newick2phylog.R: </b> Correct a bug. In newick2phylog.addtools,
- eigen does not return an orthogonal basis when there are null
- eigenvalues (Wscores). Vectors are now orthogonalized using qr
-
-
-
- <p><b> DESCRIPTION: </b> Change License to GPL (>=2)
-
-
-
- <p><b> ChangeLog: </b> empty log message
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-5
-
-
-
-
- <p><b> man/dunedata.Rd, man/steppe.Rd: </b> Replace non_function by Doctype
-
-
-
- <p><b> src/testdim.c, src/tests.c: </b> Correction of a bug in the
- declaration of variables
-
-
-
- <p><b> ChangeLog: </b> release of ade4 1.4-4
-
-
-
- <h1> release of ade4 1.4-4 </h1>
-
-
-
- <p><b> R/coinertia.R, R/dudi.R, R/dudi.pco.R: </b> Modification of the call
- of the imported function chooseaxes for the use of the ade4TkGUI
- package
-
-
-
- <p><b> R/within.pca.R, R/withinpca.R, man/ktab.Rd,
- man/ktab.match2ktabs.Rd, man/pta.Rd, man/statis.Rd,
- man/within.pca.Rd, man/withinpca.Rd: </b> The function within.pca is
- renamed withinpca
-
-
-
- <p><b> R/ktab.R, man/ktab.Rd: </b> Change the names of the arguments of the
- function '[.ktab'
-
-
-
- <p><b> man/amova.Rd, man/between.Rd, man/coinertia.Rd, man/corkdist.Rd,
- man/discrimin.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
- man/dudi.pco.Rd, man/foucart.Rd, man/is.euclid.Rd,
- man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
- man/kplot.pta.Rd, man/kplot.sepan.Rd, man/kplot.statis.Rd,
- man/krandtest.Rd, man/ktab.Rd, man/mcoa.Rd, man/mfa.Rd,
- man/multispati.Rd, man/neig.Rd, man/niche.Rd, man/orthobasis.Rd,
- man/pcaiv.Rd, man/phylog.Rd, man/plot.phylog.Rd, man/procuste.Rd,
- man/pta.Rd, man/randtest.Rd, man/randtest.amova.Rd,
- man/randtest.between.Rd, man/randtest.coinertia.Rd,
- man/randtest.discrimin.Rd, man/reconst.Rd, man/rlq.Rd,
- man/rtest.Rd, man/rtest.between.Rd, man/rtest.discrimin.Rd,
- man/scatter.acm.Rd, man/scatter.coa.Rd, man/scatter.dudi.Rd,
- man/scatter.fca.Rd, man/score.acm.Rd, man/score.coa.Rd,
- man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
- man/supcol.Rd, man/suprow.Rd, man/testdim.Rd, man/within.Rd,
- man/witwit.coa.Rd: </b> Correct usage entries for S3 methods
-
-
-
- <p><b> DESCRIPTION: </b> suggests ade4TkGUI
-
-
-
- <p><b> R/randtest.between.R: </b> modif eval pour ne pas chercher dans
- l'environnement global directement
-
-
-
- <p><b> src/Makevars: </b> replace CRLF (DOS) by LF (Unix)
-
-
-
- <p><b> R/coinertia.R, R/dudi.R, R/dudi.pco.R: </b> modif pour variable
- globale ade4TkGUIFlag
-
-
-
- <p><b> man/PI2newick.Rd, man/RV.rtest.Rd, man/RVdist.randtest.Rd,
- man/aminoacyl.Rd, man/ardeche.Rd, man/area.plot.Rd,
- man/as.taxo.Rd, man/atlas.Rd, man/atya.Rd, man/avijons.Rd,
- man/aviurba.Rd, man/baran95.Rd, man/between.Rd,
- man/bicenter.wt.Rd, man/buech.Rd, man/cailliez.Rd,
- man/carni70.Rd, man/casitas.Rd, man/cca.Rd, man/chatcat.Rd,
- man/chats.Rd, man/clementines.Rd, man/coinertia.Rd,
- man/corkdist.Rd, man/discrimin.Rd, man/discrimin.coa.Rd,
- man/dist.binary.Rd, man/dist.dudi.Rd, man/dist.genet.Rd,
- man/dist.neig.Rd, man/dist.prop.Rd, man/dist.quant.Rd,
- man/divcmax.Rd, man/dotchart.phylog.Rd, man/dotcircle.Rd,
- man/doubs.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
- man/dudi.coa.Rd, man/dudi.dec.Rd, man/dudi.fca.Rd,
- man/dudi.mix.Rd, man/dudi.nsc.Rd, man/dudi.pca.Rd,
- man/dudi.pco.Rd, man/escopage.Rd, man/euro123.Rd, man/fruits.Rd,
- man/fuzzygenet.Rd, man/gearymoran.Rd, man/genet.Rd,
- man/granulo.Rd, man/gridrowcol.Rd, man/ichtyo.Rd,
- man/inertia.dudi.Rd, man/is.euclid.Rd, man/julliot.Rd,
- man/jv73.Rd, man/kdist.Rd, man/kdist2ktab.Rd, man/kdisteuclid.Rd,
- man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
- man/kplot.pta.Rd, man/kplot.sepan.Rd, man/kplot.statis.Rd,
- man/ktab.Rd, man/ktab.data.frame.Rd, man/ktab.list.df.Rd,
- man/ktab.list.dudi.Rd, man/ktab.match2ktabs.Rd,
- man/ktab.within.Rd, man/lascaux.Rd, man/lingoes.Rd, man/macon.Rd,
- man/mafragh.Rd, man/mantel.rtest.Rd, man/mariages.Rd,
- man/mcoa.Rd, man/meau.Rd, man/meaudret.Rd, man/mfa.Rd,
- man/microsatt.Rd, man/mjrochet.Rd, man/mld.Rd, man/mollusc.Rd,
- man/monde84.Rd, man/morphosport.Rd, man/mstree.Rd,
- man/multispati.Rd, man/multispati.randtest.Rd,
- man/multispati.rtest.Rd, man/neig.Rd, man/newick.eg.Rd,
- man/newick2phylog.Rd, man/niche.Rd, man/njplot.Rd,
- man/orthobasis.Rd, man/orthogram.Rd, man/ours.Rd, man/palm.Rd,
- man/pcaiv.Rd, man/pcaivortho.Rd, man/pcoscaled.Rd, man/phylog.Rd,
- man/plot.phylog.Rd, man/procuste.Rd, man/procuste.rtest.Rd,
- man/pta.Rd, man/quasieuclid.Rd, man/reconst.Rd, man/rhone.Rd,
- man/rpjdl.Rd, man/rtest.Rd, man/rtest.between.Rd,
- man/rtest.discrimin.Rd, man/s.arrow.Rd, man/s.chull.Rd,
- man/s.class.Rd, man/s.corcircle.Rd, man/s.distri.Rd,
- man/s.hist.Rd, man/s.image.Rd, man/s.kde2d.Rd, man/s.label.Rd,
- man/s.logo.Rd, man/s.match.Rd, man/s.multinom.Rd,
- man/s.traject.Rd, man/s.value.Rd, man/sarcelles.Rd,
- man/scalewt.Rd, man/scatter.Rd, man/scatter.acm.Rd,
- man/scatter.coa.Rd, man/scatter.dudi.Rd, man/scatter.fca.Rd,
- man/sco.boxplot.Rd, man/sco.distri.Rd, man/sco.quant.Rd,
- man/score.Rd, man/score.acm.Rd, man/score.coa.Rd,
- man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
- man/steppe.Rd, man/supcol.Rd, man/suprow.Rd,
- man/symbols.phylog.Rd, man/t3012.Rd, man/table.cont.Rd,
- man/table.dist.Rd, man/table.paint.Rd, man/table.phylog.Rd,
- man/table.value.Rd, man/tarentaise.Rd, man/triangle.class.Rd,
- man/triangle.plot.Rd, man/trichometeo.Rd, man/ungulates.Rd,
- man/uniquewt.df.Rd, man/variance.phylog.Rd, man/veuvage.Rd,
- man/westafrica.Rd, man/within.Rd, man/within.pca.Rd,
- man/witwit.coa.Rd, man/worksurv.Rd: </b> Added the encoding of Rd
- files and remove the email of Daniel Chessel (he is retired)
-
-
-
- <p><b> R/scatter.acm.R: Clean R files: </b> replace T by TRUE.
-
-
-
- <p><b> R/newick2phylog.R: Clean R files: </b> remove multiple function
- definitions (floc1(s) becomes floc1,floc2,floc3. Thanks to
- UsagePackageCheck of codetools
-
-
-
- <p><b> R/multispati.R, R/multispati.randtest.R, R/multispati.rtest.R,
- R/neig.R, R/orthobasis.R, R/s.image.R, R/s.kde2d.R, R/s.logo.R: </b>
- Clean R files: </b> correct imported function definition. Thanks to
- UsagePackageCheck of codetools
-
-
-
- <p><b> R/orthogram.R: Correct a bug: </b> test for the choice between
- orthobas, neig or phylog
-
-
-
- <p><b> R/scatter.acm.R: Correct a bug: </b> replace score. by score.acm
-
-
-
- <p><b> R/kplot.foucart.R, R/kplot.mfa.R, R/mcoa.R, R/rlq.R,
- R/score.coa.R, R/sepan.R, R/variance.phylog.R: Clean R files: </b>
- remove local variables assigned but not used. Thanks to
- checkUsagePackage of codetools
-
-
-
- <p><b> R/PI2newick.R, R/RV.rtest.R, R/RVdist.randtest.R, R/amova.R,
- R/area.plot.R, R/as.taxo.R, R/between.R, R/coinertia.R,
- R/corkdist.R, R/disc.R, R/discrimin.R, R/discrimin.coa.R,
- R/dist.dudi.R, R/dist.genet.R, R/dotcircle.R, R/dudi.coa.R,
- R/dudi.dec.R, R/dudi.nsc.R, R/foucart.R, R/fuzzygenet.R,
- R/genet.R, R/gridrowcol.R, R/kplot.foucart.R, R/kplot.mfa.R,
- R/kplot.statis.R, R/ktab.R, R/ktab.list.dudi.R,
- R/ktab.match2ktabs.R, R/ktab.within.R, R/lingoes.R, R/mcoa.R,
- R/mld.R, R/multispati.R, R/newick2phylog.R, R/niche.R,
- R/optimEH.R, R/orthobasis.R, R/orthogram.R, R/pcaiv.R,
- R/phylog.R, R/plot.phylog.R, R/procuste.R, R/rlq.R,
- R/rtest.between.R, R/s.corcircle.R, R/s.hist.R, R/s.image.R,
- R/scatter.R, R/sco.distri.R, R/score.acm.R, R/score.coa.R,
- R/score.mix.R, R/sepan.R, R/statis.R, R/symbols.phylog.R,
- R/table.cont.R, R/table.phylog.R, R/uniquewt.df.R,
- R/variance.phylog.R, R/within.R, R/within.pca.R: Clean R files: </b>
- remove local variables assigned but not used. Thanks to
- checkUsagePackage of codetools
-
-
-
- <p><b> man/bordeaux.Rd, man/cca.Rd, man/dudi.hillsmith.Rd,
- man/elec88.Rd, man/seconde.Rd: Clean Rd files: </b> remove unmatched
- right brace
-
-
-
- <p><b> R/testdim.R, man/testdim.Rd, src/Makevars, src/testdim.c: </b> New
- function testdim to estimate the number of axes in multivariate
- analysis
-
-
-
- <p><b> R/gearymoran.R, R/krandtest.R, R/niche.R, R/orthogram.R,
- R/randtest.amova.R, man/gearymoran.Rd, man/krandtest.Rd,
- man/niche.Rd, man/orthogram.Rd: </b> reimplementation of the class
- krandtest and new function as.krandtest
-
-
-
- <p><b> man/vegtf.Rd: </b> correction of a bug in the example section
-
-
-
- <p><b> R/score.coa.R, man/score.coa.Rd: </b> new function reciprocal.coa (see
- http: </b>//listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00007.html)
-
-
-
- <p><b> R/sco.distri.R, man/sco.distri.Rd: </b> sco.distri returns a
- data.frame with means and variances (see
- http: </b>//listes.univ-lyon1.fr/wws/arc/adelist/2007-06/msg00018.html)
-
-
-
- <p><b> R/scatter.R, R/sepan.R, R/witwitsepan.R: </b> Add yaxt argument to
- scatterutil.eigen (see
- http: </b>//listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00022.html)
-
-
-
- <p><b> R/multispati.R: </b> Correct legend in plot.multispati
-
-
-
- <p><b> data/vegtf.rda, man/vegtf.Rd: </b> New vegetation data set to
- illustrate multispati analysis
-
-
-
- <p><b> R/niche.R, man/niche.Rd: </b> New functions niche.param and
- rtest.niche
-
-
-
- <p><b> R/area.plot.R: </b> the function area2poly is modified to export the
- bbox attribute for each polygon
-
-
-
- <p><b> R/s.corcircle.R: </b> correct bug of the grid argument. see
- http: </b>//listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00001.html
-
-
-
- <p><b> R/randtest-internal.R, R/rlq.R: </b> correct bugs in memory allocation
- (C interface). These bugs have been identified using valgrind by
- B. Ripley (12/06/2007)
-
-
-
- <p><b> man/dunedata.Rd: </b> correct the number of rows and columns in the
- help file
-
-
-
- <p><b> ChangeLog, DESCRIPTION: </b> release of ade4 1.4-3
-
-
-
-
- <p><b> man/suprow.Rd: </b> correct the example section
-
-
-
- <p><b> ChangeLog: </b> New ChangeLog
-
-
-
- <p><b> data/atlas.rda, data/avijons.rda, data/aviurba.rda,
- data/baran95.rda, data/bf88.rda, data/chevaine.rda,
- data/cnc2003.rda, data/elec88.rda, data/monde84.rda,
- data/rankrock.rda, data/rpjdl.rda, data/sarcelles.rda,
- data/steppe.rda, data/t3012.rda, data/tarentaise.rda,
- data/veuvage.rda, data/westafrica.rda: </b> remove non ASCII
- characters in data
-
-
-
- <p><b> ChangeLog, R/dudi.pco.R: reviewed by: </b> <delete if not using a
- buddy>
- <p><b> R/dudi.pco.R: </b> sub and csub arguments are now actually passed to
- s.label
-
-
-
- <p><b> ChangeLog, R/add.scatter.R, man/add.scatter.Rd, man/scatter.Rd: </b>
- R/scatter.R: </b> removed add.scatter.eig
- <p><b> man/scatter.Rd: </b> removed add.scatter.eig
- <p><b> R/add.scatter.R: </b> new functions add.scatter and add.scatter.eig
- <p><b> man/add.scatter.Rd: </b> doc for add.scatter and add.scatter.eig
-
-
-
- <p><b> R/scatter.add.R, man/scatter.add.Rd: </b> empty log message
-
-
-
- <p><b> ChangeLog, R/add.graph.R: reviewed by: </b> <delete if not using a
- buddy>
- <p><b> R/add.graph.R: </b>
- <p><b> R/dpcoa.R: </b>
- <p><b> R/dudi.pco.R: </b>
- <p><b> R/kplot.sepan.R: </b>
- <p><b> R/mfa.R: </b>
- <p><b> R/pta.R: </b>
- <p><b> R/scatter.R: </b>
- <p><b> R/scatter.add.R: </b>
- <p><b> R/scatter.coa.R: </b>
- <p><b> R/scatter.dudi.R: </b>
- <p><b> R/statis.R: </b>
- <p><b> man/scatter.Rd: </b>
- <p><b> man/scatter.add.Rd: </b>
-
-
-
- <p><b> ChangeLog, R/dpcoa.R, R/dudi.pco.R, R/kplot.sepan.R, R/mfa.R,
- R/pta.R, R/scatter.R, R/scatter.add.R, R/scatter.coa.R,
- R/scatter.dudi.R, R/statis.R, man/add.graph.Rd, man/scatter.Rd,
- man/scatter.add.Rd: reviewed by: </b> <delete if not using a buddy>
- <p><b> R/dpcoa.R: </b>
- <p><b> R/dudi.pco.R: </b>
- <p><b> R/kplot.sepan.R: </b>
- <p><b> R/mfa.R: </b>
- <p><b> R/pta.R: </b>
- <p><b> R/scatter.R: </b>
- <p><b> R/scatter.add.R: </b>
- <p><b> R/scatter.coa.R: </b>
- <p><b> R/scatter.dudi.R: </b>
- <p><b> R/statis.R: </b>
- <p><b> man/add.graph.Rd: </b>
- <p><b> man/scatter.Rd: </b>
- <p><b> man/scatter.add.Rd: </b>
-
-
-
- <p><b> ChangeLog, R/add.graph.R, R/dpcoa.R, R/dudi.pco.R,
- R/kplot.sepan.R, R/mfa.R, R/pta.R, R/scatter.R, R/scatter.coa.R,
- R/scatter.dudi.R, R/statis.R, man/add.graph.Rd, man/dudi.pca.Rd,
- man/scatter.Rd, man/scatter.dudi.Rd: reviewed by: </b> <delete if not
- using a buddy>
- <p><b> R/add.graph.R: </b> ajout de la fonction (contient add.graph et la
- nouvelle version de add.scatter.eig)
- <p><b> man/add.graph.Rd: </b> ajout de la doc (add.graph et
- add.scatter.eig)
- <p><b> R/dpcoa.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/dudi.pco.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/kplot.sepan.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/mfa.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/pta.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/scatter.R: </b> add.scatter.eig supprime (migre vers add.graph.R)
- <p><b> R/scatter.coa.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/scatter.dudi.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> R/statis.R: appel de add.scatter.eig: </b> nf supprime
- <p><b> man/dudi.pca.Rd: </b> modifications faites par Anne
- <p><b> man/scatter.Rd: </b> enleve add.scatter.eig de la doc (migre vers
- add.graph.Rd)
- <p><b> man/scatter.dudi.Rd: appel de add.scatter.eig: </b> nf supprime
-
-
-
- <p><b> ChangeLog, data/rpjdl.rda: reviewed by: </b> <delete if not using a
- buddy>
- <p><b> data/rpjdl.rda: </b> removed accents
-
-
-
- <p><b> ChangeLog, R/s.arrow.R, man/s.arrow.Rd: R/s.arrow.R: </b> added the
- "boxes" argument
- <p><b> man/s.arrow.Rd: </b> added the "boxes" argument
-
-
-
- <p><b> ChangeLog, man/orthogram.Rd: man/orthogram.Rd: </b> update the
- reference to Ollier et al.
-
-</small><?php
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